View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2495_low_129 (Length: 223)

Name: NF2495_low_129
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2495_low_129
NF2495_low_129
[»] chr6 (2 HSPs)
chr6 (77-144)||(31095128-31095195)
chr6 (147-187)||(31095240-31095280)
[»] scaffold0202 (2 HSPs)
scaffold0202 (80-143)||(3852-3915)
scaffold0202 (147-191)||(3962-4007)
[»] chr1 (1 HSPs)
chr1 (1-80)||(6608649-6608733)


Alignment Details
Target: chr6 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 31095128 - 31095195
Alignment:
Q  77 tagttgacaaaagcttcttggagcatgtggttgagatatgagatgcaagaacatgtattcttttttgt 144  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31095128 tagttgacaagagcttcttggagcatgtggttgagatatgagatgcaagaacttgtattcttttttgt 31095195  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 31095240 - 31095280
Alignment:
Q  147 gccacaaattcatcgtacggactgatgagaagagtctgaag 187  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  31095240 gccacaaattcatcgtccggactgatgagaagagtctgaag 31095280  T

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Target: scaffold0202 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 143
Target Start/End: Original strand, 3852 - 3915
Alignment:
Q  80 ttgacaaaagcttcttggagcatgtggttgagatatgagatgcaagaacatgtattcttttttg 143  Q
    ||||||| |||||||||||||||||||||||||||||||| | |||||| ||||||||||||||    
T  3852 ttgacaagagcttcttggagcatgtggttgagatatgagaggaaagaacttgtattcttttttg 3915  T

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Target: scaffold0202; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 3962 - 4007
Alignment:
Q  147 gccacaaattcatcgtacggact-gatgagaagagtctgaagacac 191  Q
    |||||||||||||||| |||| | ||||||||||||||||||||||    
T  3962 gccacaaattcatcgtccggatttgatgagaagagtctgaagacac 4007  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 6608733 - 6608649
Alignment:
Q  1 ttaaacgttaaaacaacaactaaatataaataaaattttgtcagcga--ca---gcgacagttaaaaaggaacggagggagtagt 80  Q
    |||||| || |||||||||||||||| |||||||||||||||||| |  ||    |||||||||||||| |||||||||||||||    
T  6608733 ttaaactttgaaacaacaactaaatagaaataaaattttgtcagcaaagcaaatacgacagttaaaaagaaacggagggagtagt 6608649  T

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