View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2495_low_13 (Length: 494)
Name: NF2495_low_13
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 58 - 477
Target Start/End: Complemental strand, 29144315 - 29143896
Alignment:
| Q |
58 |
acactgattgcttataaatgtgtttggttgttttggacatgaaaattagaaaaataataattgagtgaggtatttaagggtatagtagaaacataaggtg |
157 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29144315 |
acaccgattggttataaatgtgtttggttgttttggacgtgaaaattagaaaaataataattgagggaggtatttaagggtatagtagaaacataaggtg |
29144216 |
T |
|
| Q |
158 |
ttgaaacttgacagtgaagtggaaacttgcattagtgtgtttgtttcaacttaaagtagataaaaaggtttaaattttgccaaagctatatatcaaattt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29144215 |
ttgaaacttgacagtgaagtggaaacttgcattagtgtgtttgtttcaacttagagtagataaaaaggtttaaattttgccaaagctatatatcaaattt |
29144116 |
T |
|
| Q |
258 |
gagaaaatttaaatgtaataaagtgtaaacaagtttggaacagtgatttaatagtataacatccaagatccctttgtcactcggtttgtagtggggacct |
357 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29144115 |
gagaaaatttaaatgtaataaagtgtaaaaaagtttggaacagtgatttaatagtataacatccaagatccctttgtcactcggtttgtagtggggacct |
29144016 |
T |
|
| Q |
358 |
caaccataaataacataccnnnnnnntatcaacaaattaaggttgttcatatagttgtcaatggttttatcatggcaataggaatgatgcacgtgtattg |
457 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29144015 |
caaccataaataacataccaaaaaaatatcaacaaattaaggttgttcatatagttgtcaatggttttatcatggcaataggaatgatgcacgtgtattg |
29143916 |
T |
|
| Q |
458 |
aaaacaaatgccataaaaac |
477 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
29143915 |
gaaacaaatgccataaaaac |
29143896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 29144533 - 29144474
Alignment:
| Q |
1 |
tctgatataaagaggaaaaaactactgcctaagtagtacaaaataaaagcttggttgaca |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29144533 |
tctgatataaagaggaaaaaactactgcctaagtagtacaaaataaaagcttggttgaca |
29144474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University