View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_130 (Length: 218)
Name: NF2495_low_130
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_130 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 55630764 - 55630547
Alignment:
| Q |
1 |
tcgtgattttgagtggtatgattatgaggagaaaaaggatatattgaaagagatttttggtggtgattatgattttgtgaaggaaaaaattagaagagag |
100 |
Q |
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| T |
55630764 |
tcgtgattttgagtggtatgattatgaggagaaaaaggatatattgaaagagatttttggtggtgattatgattttgtgaaggaaaaaattagaagagag |
55630665 |
T |
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| Q |
101 |
gttgaacttgccattcaaattgttggcggtgataagtcttcgtctggattcaaacgcataatcatgtcacgcttgcgggagagtgcttttgatgctggta |
200 |
Q |
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| T |
55630664 |
gttgaacttgccattcaagttgttggcggtgataagtcttcgtctggattcaaacgcataatcatgtcacgcttgcgggagagtggttttgatgctggta |
55630565 |
T |
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| Q |
201 |
agaatttttactactcta |
218 |
Q |
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| T |
55630564 |
agaatttttgctactcta |
55630547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 55616071 - 55615880
Alignment:
| Q |
1 |
tcgtgattttgagtggtatgattatgaggagaaaaaggatatattgaaagagatttttggtggtgattatgattttgtgaaggaaaaaattagaagagag |
100 |
Q |
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| T |
55616071 |
tcgtgattttgagtggtatgattacgaggagaagagggagatactgaaagagattttta---------atgatactgtgaaagagaagattagaagagag |
55615981 |
T |
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| Q |
101 |
gttgaacttgccattcaaattgttggcggtgataagtcttcgtctggattcaaacgcataatcatgtcacgcttgcgggagagtgcttttgatgctggta |
200 |
Q |
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| T |
55615980 |
gctgaacttgcaattgaagttgttggtggtgacaaatcttcgcctggattcaaacgcatggtgatgtcacgcttgcgggaaagaggatttgatgctggta |
55615881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 55623375 - 55623184
Alignment:
| Q |
1 |
tcgtgattttgagtggtatgattatgaggagaaaaaggatatattgaaagagatttttggtggtgattatgattttgtgaaggaaaaaattagaagagag |
100 |
Q |
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|||||||||||||||||||||||| |||||||| | ||| ||| |||||||||||||| ||||| |||||| || || |||||||||||| |
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| T |
55623375 |
tcgtgattttgagtggtatgattacgaggagaagagggagatactgaaagagattttta---------atgatactgtgaaagagaagattagaagagag |
55623285 |
T |
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| Q |
101 |
gttgaacttgccattcaaattgttggcggtgataagtcttcgtctggattcaaacgcataatcatgtcacgcttgcgggagagtgcttttgatgctggta |
200 |
Q |
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| T |
55623284 |
gctgaacttgcaattgaagttgttggtggtgacaaatcttcgcctggattcaaacgcatggtgatgtcacgcttgcgggaaagaggatttgatgctggta |
55623185 |
T |
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