View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_132 (Length: 213)
Name: NF2495_low_132
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_132 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 6233533 - 6233730
Alignment:
| Q |
1 |
atggaaaagaatatatttttattccaaaatatcaaaagatagtacttgtcccaataactttacataagaacaaaaactaactcatcagagtaaatcttca |
100 |
Q |
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| T |
6233533 |
atggaaaggaatatatttttattccaaaatatcaaaagatagtacttgtcccaataactttacataagaacaaaaactaactcatcagagtaaatcttca |
6233632 |
T |
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| Q |
101 |
aaattacatggcagctcctctataaccatgttgtagaatttctgaatatctatcagcatattagcctcatcctctgtcatgaagtttatagcaaattt |
198 |
Q |
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| T |
6233633 |
aaattacatggcagctcctctataaccatgttgtagaatttctgaatatctatgagcatattagcctcatcctctatcatgaagtttatagcaaattt |
6233730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 50 - 198
Target Start/End: Original strand, 6226324 - 6226472
Alignment:
| Q |
50 |
cccaataactttacataagaacaaaaactaactcatcagagtaaatcttcaaaattacatggcagctcctctataaccatgttgtagaatttctgaatat |
149 |
Q |
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| T |
6226324 |
cccaataactttacagaagaacaaaatttaactcatcagagcaaatcttcaaaattgcatggcagctcctctataaccatattgtagaatttctgaatat |
6226423 |
T |
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| Q |
150 |
ctatcagcatattagcctcatcctctgtcatgaagtttatagcaaattt |
198 |
Q |
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| T |
6226424 |
ctatgatcatactagtctcatcctctgtcatgaagtttatagcaaattt |
6226472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 6249086 - 6249169
Alignment:
| Q |
67 |
agaacaaaaactaactcatcagagtaaatcttcaaaattacatggcagctcctctataaccatgttgtagaatttctgaatatc |
150 |
Q |
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| T |
6249086 |
agaacaaaaattaactcatcagagcaaatcagcaacatttgatggcagctcctctatagtcacattgtagaatttctgaatatc |
6249169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 150
Target Start/End: Original strand, 6240672 - 6240765
Alignment:
| Q |
57 |
actttacataagaacaaaaactaactcatcagagtaaatcttcaaaattacatggcagctcctctataaccatgttgtagaatttctgaatatc |
150 |
Q |
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| T |
6240672 |
acttaacatatgaacaaaaatcaactcatgagagcaaatcagcaaaatttgatggcagctcctctataatcacattggagagtttctggatatc |
6240765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 58 - 194
Target Start/End: Complemental strand, 17545799 - 17545663
Alignment:
| Q |
58 |
ctttacataagaacaaaaactaactcatcagagtaaatcttcaaaattacatggcagctcctctataaccatgttgtagaatttctgaatatctatcagc |
157 |
Q |
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||||||||||||||||||| |||||||||||| || || ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| | | |
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| T |
17545799 |
ctttacataagaacaaaaatgaactcatcagagcaactcatcaaaattatatggcagctcctctataaccatattgtagaatttctgaatatctatgatc |
17545700 |
T |
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| Q |
158 |
atattagcctcatcctctgtcatgaagtttatagcaa |
194 |
Q |
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| T |
17545699 |
attgtagcctcatcctttgtcataaagtttatagcaa |
17545663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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