View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2495_low_14 (Length: 494)

Name: NF2495_low_14
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2495_low_14
NF2495_low_14
[»] chr8 (7 HSPs)
chr8 (201-487)||(9661962-9662253)
chr8 (7-134)||(9662322-9662448)
chr8 (70-132)||(24768658-24768720)
chr8 (203-261)||(15568711-15568770)
chr8 (215-264)||(1553968-1554020)
chr8 (203-261)||(19152440-19152500)
chr8 (201-263)||(25653701-25653765)
[»] chr7 (4 HSPs)
chr7 (70-127)||(26254756-26254813)
chr7 (201-263)||(12005261-12005325)
chr7 (201-261)||(442848-442910)
chr7 (201-261)||(47370466-47370529)
[»] chr5 (3 HSPs)
chr5 (70-127)||(6117705-6117762)
chr5 (201-262)||(8855678-8855741)
chr5 (201-260)||(12147908-12147970)
[»] chr4 (5 HSPs)
chr4 (201-262)||(46523222-46523284)
chr4 (201-263)||(12388083-12388146)
chr4 (202-264)||(24675281-24675345)
chr4 (70-127)||(29104280-29104337)
chr4 (215-257)||(31068719-31068763)
[»] chr6 (3 HSPs)
chr6 (202-261)||(29942526-29942586)
chr6 (216-261)||(16659791-16659837)
chr6 (70-127)||(34414469-34414526)
[»] chr1 (2 HSPs)
chr1 (205-265)||(22791604-22791666)
chr1 (70-127)||(21770874-21770931)
[»] chr2 (6 HSPs)
chr2 (205-260)||(31989350-31989407)
chr2 (201-262)||(43830501-43830565)
chr2 (70-99)||(16204534-16204563)
chr2 (201-263)||(38128075-38128139)
chr2 (215-262)||(18386591-18386641)
chr2 (214-262)||(30728932-30728980)
[»] chr3 (3 HSPs)
chr3 (70-126)||(2985697-2985753)
chr3 (215-264)||(20078353-20078404)
chr3 (215-266)||(26932534-26932586)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 201 - 487
Target Start/End: Complemental strand, 9662253 - 9661962
Alignment:
Q  201 tattttacaaggaggaaaaccagaaatagcttatattacaggg-taaaacactattaaccctttaatctatttcaataaaaacttttgagtnnnnnnnn- 298  Q
    |||||||||| | | ||||||||||||| |||||||||||| | ||||||||||||||| |||||||||||||||||| ||||||||||||             
T  9662253 tattttacaaagggaaaaaccagaaataacttatattacagagctaaaacactattaacactttaatctatttcaatacaaacttttgagtcaaaaaata 9662154  T
Q  299 ---taaaattcaattcaatatatacttttcttttcccttttccttcacaaaacacgtttccaacaaaattcccctgtcccatacctccacaaacaaaact 395  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9662153 aaataaaattcaattcaatatatacttttcttttcccttttccttcacaaaacacgtttccaacaaaattcccctgtcccatacctccacaaacaaaact 9662054  T
Q  396 ccaacctctctctgtattcatcttgtttgctacaaattccattccaaaccttcaacaatgtccaacaacagcaacaacaacgcatgtgggtt 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9662053 ccaacctctctctgtattcatcttgtttgctacaaattccattccaaaccttcaacaatgtccaacaacagcaacaacaacgcatgtgggtt 9661962  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 9662448 - 9662322
Alignment:
Q  7 gggagaaccttgttgaagagcgataggaatagagatggagaggcgtggtgtgtgattggtgatttttaactgtacaaaatcaaagatatggcaaaagatt 106  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||  ||||||||||||||||||||||| | ||    
T  9662448 gggagaaccttgttgaagagcg-taggaatagagatggaggggcgtggtgtgtgcttggtgatttttaaccatacaaaatcaaagatatggcaaagggtt 9662350  T
Q  107 aacggaaatttgctcaaattacaaggaa 134  Q
    ||| ||||||||||||||||||||||||    
T  9662349 aaccgaaatttgctcaaattacaaggaa 9662322  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 24768658 - 24768720
Alignment:
Q  70 ttttaactgtacaaaatcaaagatatggcaaaagattaacggaaatttgctcaaattacaagg 132  Q
    |||| ||||||||||||| ||||||||||||  | | ||| ||||||||||||||||||||||    
T  24768658 ttttgactgtacaaaatcgaagatatggcaaggggtaaaccgaaatttgctcaaattacaagg 24768720  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 15568770 - 15568711
Alignment:
Q  203 ttttacaaggaggaaaaccagaaatagcttatattacag-ggtaaaacactattaaccct 261  Q
    ||||||| || |||||| | ||||||||||||||||||| |||||| |||||||||||||    
T  15568770 ttttacagggtggaaaatcggaaatagcttatattacagaggtaaatcactattaaccct 15568711  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 1553968 - 1554020
Alignment:
Q  215 gaaaaccagaaatagcttatattacagg---gtaaaacactattaacccttta 264  Q
    |||||||||||||||| |||||||||||   | ||||||||||||||||||||    
T  1553968 gaaaaccagaaatagcctatattacaggggtgaaaaacactattaacccttta 1554020  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 19152440 - 19152500
Alignment:
Q  203 ttttacaaggaggaaaaccagaaatagcttatattacaggg--taaaacactattaaccct 261  Q
    |||||||||| | |||||| |||||| | ||||||||||||  ||||||||||||||||||    
T  19152440 ttttacaaggggcaaaaccggaaataacatatattacaggggttaaaacactattaaccct 19152500  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 25653765 - 25653701
Alignment:
Q  201 tattttacaaggaggaaaaccagaaatagcttatattacaggg--taaaacactattaacccttt 263  Q
    ||||||||| || ||||||||| ||||  | ||||||||||||  ||||||||||||||||||||    
T  25653765 tattttacaggggggaaaaccaaaaatgacctatattacagggggtaaaacactattaacccttt 25653701  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 26254813 - 26254756
Alignment:
Q  70 ttttaactgtacaaaatcaaagatatggcaaaagattaacggaaatttgctcaaatta 127  Q
    |||| ||||||||||||| ||||||||||| ||| ||||| |||||||||||||||||    
T  26254813 ttttgactgtacaaaatcgaagatatggcagaaggttaaccgaaatttgctcaaatta 26254756  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 12005325 - 12005261
Alignment:
Q  201 tattttacaaggaggaaaaccagaaatagcttatattacaggg--taaaacactattaacccttt 263  Q
    |||||||||||| |||||||  ||||| || ||||||||||||  ||||||||||||||||||||    
T  12005325 tattttacaagggggaaaactggaaatggcctatattacagggggtaaaacactattaacccttt 12005261  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 442848 - 442910
Alignment:
Q  201 tattttacaaggaggaaaaccagaaatagcttatattaca--gggtaaaacactattaaccct 261  Q
    ||||||||||||||||||||   |||| || |||||||||  |||||||||||||||||||||    
T  442848 tattttacaaggaggaaaactgaaaatggcctatattacagggggtaaaacactattaaccct 442910  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 47370466 - 47370529
Alignment:
Q  201 tattttacaaggaggaaaaccagaaatagcttatattacag---ggtaaaacactattaaccct 261  Q
    |||||||||||| |||||||  ||||| || ||||||||||   ||||||||||||||||||||    
T  47370466 tattttacaagggggaaaactggaaatggcctatattacagggaggtaaaacactattaaccct 47370529  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 6117705 - 6117762
Alignment:
Q  70 ttttaactgtacaaaatcaaagatatggcaaaagattaacggaaatttgctcaaatta 127  Q
    |||| ||||||||||||| ||||||||||| | ||| |||||||||||||||||||||    
T  6117705 ttttgactgtacaaaatcgaagatatggcagaggataaacggaaatttgctcaaatta 6117762  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 8855678 - 8855741
Alignment:
Q  201 tattttacaaggaggaaaaccagaaatagcttatattacag--ggtaaaacactattaaccctt 262  Q
    |||||||||||| |||||| | |||||  ||||||||||||  |||||||||||||||||||||    
T  8855678 tattttacaagggggaaaatcggaaatgacttatattacaggaggtaaaacactattaaccctt 8855741  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 12147970 - 12147908
Alignment:
Q  201 tattttacaaggaggaaaaccagaaatagcttatattacag---ggtaaaacactattaaccc 260  Q
    |||||||||||| | ||||||||||||  | ||||||||||   |||||||||||||||||||    
T  12147970 tattttacaaggggtaaaaccagaaatgacctatattacagggtggtaaaacactattaaccc 12147908  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 46523222 - 46523284
Alignment:
Q  201 tattttacaaggaggaaaaccagaaatagcttatattaca-gggtaaaacactattaaccctt 262  Q
    ||||||| | |||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||    
T  46523222 tattttaaagggaggaaaaccaaaaataacttatattacaggggtaaaacaccattaaccctt 46523284  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 12388146 - 12388083
Alignment:
Q  201 tattttacaaggaggaaaaccagaaatagcttatattacaggg-taaaacactattaacccttt 263  Q
    |||||||||||| | |||||| |||||  | |||||||||||| ||||||||||||||||||||    
T  12388146 tattttacaaggggtaaaaccggaaatgacctatattacaggggtaaaacactattaacccttt 12388083  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 24675345 - 24675281
Alignment:
Q  202 attttacaaggaggaaaaccagaaatagcttatattacag--ggtaaaacactattaacccttta 264  Q
    ||||||||||||| |||| |  ||||||| ||||||||||  ||||||||| |||||||||||||    
T  24675345 attttacaaggagtaaaatcctaaatagcctatattacaggaggtaaaacaatattaacccttta 24675281  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 29104280 - 29104337
Alignment:
Q  70 ttttaactgtacaaaatcaaagatatggcaaaagattaacggaaatttgctcaaatta 127  Q
    |||||||||||||||||| |||||||||||   | | ||| |||||||||||||||||    
T  29104280 ttttaactgtacaaaatcgaagatatggcagggggtaaaccgaaatttgctcaaatta 29104337  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 31068719 - 31068763
Alignment:
Q  215 gaaaaccagaaatagcttatattacagggt--aaaacactattaa 257  Q
    |||||||||||||||| |||||||||||||  |||||||||||||    
T  31068719 gaaaaccagaaatagcctatattacagggtgaaaaacactattaa 31068763  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 29942586 - 29942526
Alignment:
Q  202 attttacaaggaggaaaaccagaaatagcttatattaca-gggtaaaacactattaaccct 261  Q
    |||||||| || |||||||   ||||||||||||||||| |||||||||||||||||||||    
T  29942586 attttacagggtggaaaactgaaaatagcttatattacaggggtaaaacactattaaccct 29942526  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 16659791 - 16659837
Alignment:
Q  216 aaaaccagaaatagcttatattacaggg-taaaacactattaaccct 261  Q
    |||||| |||||| |||||||||||||| ||||||||||||||||||    
T  16659791 aaaaccggaaataacttatattacaggggtaaaacactattaaccct 16659837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 34414526 - 34414469
Alignment:
Q  70 ttttaactgtacaaaatcaaagatatggcaaaagattaacggaaatttgctcaaatta 127  Q
    |||||||||||||||||| |||||||| || | ||| ||  |||||||||||||||||    
T  34414526 ttttaactgtacaaaatcgaagatatgacagaggataaatcgaaatttgctcaaatta 34414469  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 22791666 - 22791604
Alignment:
Q  205 ttacaaggaggaaaaccagaaatagcttatattacag--ggtaaaacactattaaccctttaa 265  Q
    ||||| |||||||||||| |||||  |||||||||||  |||||||||||| |||||||||||    
T  22791666 ttacagggaggaaaaccataaatattttatattacagagggtaaaacactactaaccctttaa 22791604  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 21770874 - 21770931
Alignment:
Q  70 ttttaactgtacaaaatcaaagatatggcaaaagattaacggaaatttgctcaaatta 127  Q
    |||| ||||||||||||| ||||||||||| | | | ||| |||||||||||||||||    
T  21770874 ttttgactgtacaaaatcgaagatatggcagagggtaaaccgaaatttgctcaaatta 21770931  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 31989407 - 31989350
Alignment:
Q  205 ttacaaggaggaaaaccagaaatagcttatattaca--gggtaaaacactattaaccc 260  Q
    ||||||||||| ||||| ||||| || |||||||||  ||||||||||||||||||||    
T  31989407 ttacaaggaggtaaaccggaaatggcctatattacagggggtaaaacactattaaccc 31989350  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 43830565 - 43830501
Alignment:
Q  201 tattttacaaggaggaaaaccagaaatagcttatattacaggg---taaaacactattaaccctt 262  Q
    |||||||||||| ||||||||||||||| | || |||||||||   |||| ||||||||||||||    
T  43830565 tattttacaagggggaaaaccagaaataacctaaattacagggagttaaagcactattaaccctt 43830501  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 16204563 - 16204534
Alignment:
Q  70 ttttaactgtacaaaatcaaagatatggca 99  Q
    ||||||||||||||||||||||||||||||    
T  16204563 ttttaactgtacaaaatcaaagatatggca 16204534  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 38128075 - 38128139
Alignment:
Q  201 tattttacaaggaggaaaaccagaaatagcttatattaca--gggtaaaacactattaacccttt 263  Q
    ||||||||| || |||||||  |||||| |||||||||||  |||||||| ||||||||||||||    
T  38128075 tattttacaggggggaaaactggaaataacttatattacagggggtaaaagactattaacccttt 38128139  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 18386591 - 18386641
Alignment:
Q  215 gaaaaccagaaatagcttatattacagg---gtaaaacactattaaccctt 262  Q
    |||||||| |||||||||||||||||||   | ||||||||||||||||||    
T  18386591 gaaaaccaaaaatagcttatattacaggggtgaaaaacactattaaccctt 18386641  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 30728932 - 30728980
Alignment:
Q  214 ggaaaaccagaaatagcttatattacagggtaaaacactattaaccctt 262  Q
    ||||||||| ||||  |||||||||||||||||| ||| ||||||||||    
T  30728932 ggaaaaccaaaaatgacttatattacagggtaaagcaccattaaccctt 30728980  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 2985753 - 2985697
Alignment:
Q  70 ttttaactgtacaaaatcaaagatatggcaaaagattaacggaaatttgctcaaatt 126  Q
    |||| ||||||||||||| | ||||||||| | ||| ||| ||||||||||||||||    
T  2985753 ttttgactgtacaaaatcgatgatatggcagaggataaaccgaaatttgctcaaatt 2985697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 20078404 - 20078353
Alignment:
Q  215 gaaaaccagaaatagcttatattacagg--gtaaaacactattaacccttta 264  Q
    |||||||| ||||| |||||||| ||||  ||||||||||||||||||||||    
T  20078404 gaaaaccaaaaataacttatattgcaggaggtaaaacactattaacccttta 20078353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 26932534 - 26932586
Alignment:
Q  215 gaaaaccagaaatagcttatattaca-gggtaaaacactattaaccctttaat 266  Q
    ||||||| |||||  | ||||||||| ||||||||||||||||||||||||||    
T  26932534 gaaaaccggaaatgacctatattacaagggtaaaacactattaaccctttaat 26932586  T

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