View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2495_low_16 (Length: 470)

Name: NF2495_low_16
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2495_low_16
NF2495_low_16
[»] chr4 (3 HSPs)
chr4 (19-465)||(50641340-50641786)
chr4 (327-458)||(50636246-50636376)
chr4 (85-161)||(14798457-14798534)
[»] scaffold0005 (1 HSPs)
scaffold0005 (85-161)||(41194-41271)
[»] chr7 (1 HSPs)
chr7 (85-161)||(31420692-31420769)
[»] chr6 (1 HSPs)
chr6 (85-161)||(95995-96072)
[»] chr5 (1 HSPs)
chr5 (85-161)||(22271637-22271714)
[»] chr3 (2 HSPs)
chr3 (85-161)||(2735323-2735400)
chr3 (85-161)||(40924369-40924446)
[»] chr2 (1 HSPs)
chr2 (85-149)||(5087421-5087486)
[»] chr1 (1 HSPs)
chr1 (85-156)||(27132142-27132214)


Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 50641786 - 50641340
Alignment:
Q  19 gatattgcacatgttaaaggcagtacaacattatctcgtaagaaagaattatgcgttatactttaacttgatgtttctagcatttgtggtaagggaatga 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50641786 gatattgcacatgttaaaggcagtacaacattatctcttaagaaagaattatgcgttatactttaacttgatgtttctagcatttgtggtaagggaatga 50641687  T
Q  119 aggtgttagcaataagagaggagagtggaatgatttacgagcattattatttctctctttgtgtgtcacacttttaaatcaaccttagtacttcaccatc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50641686 aggtgttagcaataagagaggagagtggaatgatttacgagcattattatttctctctttgtgtgtcacacttttaaatcaaccttagtacttcaccatc 50641587  T
Q  219 ttaaacttgtgtaatctatgaaacttaatcatttgatagtacaataaaaatttaataacgactagtatactcattacactatcaataattcaatgaaaat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50641586 ttaaacttgtgtaatctatgaaacttaatcatttgatagtacaataaaaatttaataacgactagtatactcattacactatcaataattcaatgaaaat 50641487  T
Q  319 gtttaaattatttatttcacagcacaatttataagcacattatcatttgcacaattttcatttcagttttctgagttctaaaagacatgatgaagatgaa 418  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50641486 ctttaaattatttatttcacagcacaatttataagcacattatcatttgcacaattttcatttcagttttctgagttctaaaagacatgatgaagatgaa 50641387  T
Q  419 tgcattagcattagctatcttcttgtccattattgtttcatctcact 465  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||    
T  50641386 tgcattagcattagctatcttcttgtgcattattgtttcatgtcact 50641340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 327 - 458
Target Start/End: Complemental strand, 50636376 - 50636246
Alignment:
Q  327 tatttatttcacagcacaatttataagcacattatcatttgcacaattttcatttcagttt-tctgagttctaaaagacatgatgaagatgaatgcatta 425  Q
    |||||||| | || |||||| ||||| |||  ||||||||||||||||||||||||||||| | |||||||||||||||||||  ||||||||| |||||    
T  50636376 tatttattgctcatcacaatctataaacac--tatcatttgcacaattttcatttcagtttctttgagttctaaaagacatgacaaagatgaatccatta 50636279  T
Q  426 gcattagctatcttcttgtccattattgtttca 458  Q
    |||||||||||| |||||| || ||| ||||||    
T  50636278 gcattagctatcatcttgtgcactatggtttca 50636246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 14798534 - 14798457
Alignment:
Q  85 cttgatgtttctagcatttgtggt-aagggaatgaaggtgttagcaataagagaggagagtggaatgatttacgagca 161  Q
    ||||||||||||| |||| ||||| ||||| |||| |||| |||||||| ||||||||| ||||||| ||||| ||||    
T  14798534 cttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagca 14798457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 41194 - 41271
Alignment:
Q  85 cttgatgtttctagcatttgtggt-aagggaatgaaggtgttagcaataagagaggagagtggaatgatttacgagca 161  Q
    ||||||||||||| |||| ||||| ||||| |||| |||| |||||||| ||||||||| ||||||| ||||| ||||    
T  41194 cttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagca 41271  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 31420692 - 31420769
Alignment:
Q  85 cttgatgtttctagcatttgtggt-aagggaatgaaggtgttagcaataagagaggagagtggaatgatttacgagca 161  Q
    ||||||||||||| |||| ||||| ||||| |||| |||| |||||||| ||||||||| ||||||| ||||| ||||    
T  31420692 cttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagca 31420769  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 95995 - 96072
Alignment:
Q  85 cttgatgtttctagcatttgtggt-aagggaatgaaggtgttagcaataagagaggagagtggaatgatttacgagca 161  Q
    ||||||||||||| |||| ||||| ||||| |||| |||| |||||||| ||||||||| ||||||| ||||| ||||    
T  95995 cttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagca 96072  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 22271714 - 22271637
Alignment:
Q  85 cttgatgtttctagcatttgtggt-aagggaatgaaggtgttagcaataagagaggagagtggaatgatttacgagca 161  Q
    ||||||||||||| |||| ||||| ||||| |||| |||| |||||||| ||||||||| ||||||| ||||| ||||    
T  22271714 cttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagca 22271637  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 2735323 - 2735400
Alignment:
Q  85 cttgatgtttctagcatttgtggt-aagggaatgaaggtgttagcaataagagaggagagtggaatgatttacgagca 161  Q
    ||||||||||||| |||| ||||| ||||| |||| |||| |||||||| ||||||||| ||||||| ||||| ||||    
T  2735323 cttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagca 2735400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 40924369 - 40924446
Alignment:
Q  85 cttgatgtttctagcatttgtggt-aagggaatgaaggtgttagcaataagagaggagagtggaatgatttacgagca 161  Q
    ||||||||||||| |||| ||||| ||||| |||| |||| |||||||| ||||||||| ||||||| ||||| ||||    
T  40924369 cttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagca 40924446  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 5087421 - 5087486
Alignment:
Q  85 cttgatgtttctagcatttgtggt-aagggaatgaaggtgttagcaataagagaggagagtggaat 149  Q
    ||||||||||||| |||| ||||| ||||| |||| |||| |||||||| ||||||||| ||||||    
T  5087421 cttgatgtttctaacattcgtggtcaagggtatgatggtgctagcaatatgagaggagaatggaat 5087486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 27132142 - 27132214
Alignment:
Q  85 cttgatgtttctagcatttgtggt-aagggaatgaaggtgttagcaataagagaggagagtggaatgatttac 156  Q
    ||||||||||||| |||| ||||| ||||| |||| |||| | |||||| ||||||||| ||||||| |||||    
T  27132142 cttgatgtttctaacattcgtggtcaagggtatgacggtgctggcaatatgagaggagaatggaatggtttac 27132214  T

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