View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_18 (Length: 453)
Name: NF2495_low_18
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 17 - 439
Target Start/End: Complemental strand, 12219976 - 12219554
Alignment:
| Q |
17 |
caaatctacccaatctaatggctcatcttcatacacatcaaccattttaccaaacccttccatatctcctggtttttgccaaagcttacttttctcttcc |
116 |
Q |
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| T |
12219976 |
caaatctacccaatctaatggttcatcttcatacacatcaaccattttaccaaacccttccatatctcctggtttttgccaaagcttactcttctcttcc |
12219877 |
T |
|
| Q |
117 |
attgaaagattgaaaagttctcgagcacctatcttcacatcttccagcatttccatgctatgtccgtgattaattagctgttacacataaccacaatttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12219876 |
attgaaagattgaaaagttctcgagcacctatcttcacatcttccagcatttccatgctatgtccgtgattaattagctgttacacataaccacaatttt |
12219777 |
T |
|
| Q |
217 |
tatagagttacattactctatgtttggtgcagtaaatataatacacaattttatttcattcatttgtatttatagtcactcaatcatataaccatttgat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12219776 |
tatagagttacattactctatgtttggtgcagtaaatataatacacaattatatttcattcatttgtatttatagtcactcaatcatataaccatttgat |
12219677 |
T |
|
| Q |
317 |
ctttaaaatacatacacttttcatcatatagtcatacaaattgatagtttatatataactgaattgcaatctgaaaagttttacattgaccttatatcaa |
416 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12219676 |
ctttgaaatacatgtacttttcatcatatagtcatacaaattgatagtttatatataactgaattgcaatctgaaaagttttacattgaccttatatcaa |
12219577 |
T |
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| Q |
417 |
aattattctcttaattttagtct |
439 |
Q |
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||||||||||||||||||||||| |
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| T |
12219576 |
aattattctcttaattttagtct |
12219554 |
T |
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