View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_2 (Length: 663)
Name: NF2495_low_2
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 172 - 450
Target Start/End: Complemental strand, 12289200 - 12288925
Alignment:
| Q |
172 |
ttgtggttggcactatataa-gatacgaagcgttttggtgtttcgtagtctcacttttatatatttacggaaatgaccctgtgttgatcattttggggtg |
270 |
Q |
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| T |
12289200 |
ttgtggctggcactatataaagatacgaagcgttttggtgtttcgtagtctcacttttatatatttacggaaataaccctgtgttgatcattttggggtg |
12289101 |
T |
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| Q |
271 |
cttgaattgttgaacacgattggggattgagttttggtgacaggttgtcagtgactattgagattgccacgcagagatgaaatgtatcattttcccccgc |
370 |
Q |
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| T |
12289100 |
c-----ttgttgaacacgattggggattgagttttggtgacaggttgtcagtgactattgagatttggccgcagagatgaaatgtatcattttcccccgc |
12289006 |
T |
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| Q |
371 |
ttttcttaattgcgtttttc-gatatatttattactgttttacctctctttcgcggtccaatttgaatcattttcacgtta |
450 |
Q |
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| T |
12289005 |
ttttcttaattgcgtttttcggatatatttattactgttttacctctctttcgcggtccaatttgaatcattttcacgtta |
12288925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 12289371 - 12289236
Alignment:
| Q |
1 |
tagaatcaattcataattttcgaattagagaatgaaaattgagaatg------tttgtacaacattttgcaaaatgcgaattatgaaaccctaaccataa |
94 |
Q |
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| T |
12289371 |
tagaatcaattcataattttcgaattagagaatgaaaattgagaatgagttgatttgtacaacattttgcaaaatgcgaattatgaaaccctaaccataa |
12289272 |
T |
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| Q |
95 |
ccgaatttgtg---aaagaagacttttgagaaacaa |
127 |
Q |
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| T |
12289271 |
ccgaatttgtgaaaaaagaaggcttttgagaaacaa |
12289236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 12194535 - 12194404
Alignment:
| Q |
1 |
tagaatcaattcataattttcgaattagagaatgaaaattgagaatg------tttgtacaacattttgcaaaatgcgaattatgaaaccctaaccataa |
94 |
Q |
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||||||||||||||| ||| ||||| |||| ||||||||||||||| ||||||||||||| | | |||||||||||| ||| ||| |||||||| |
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| T |
12194535 |
tagaatcaattcatattttgggaattggagagtgaaaattgagaatgagttgatttgtacaacattatacgaaatgcgaattacgaatccccaaccataa |
12194436 |
T |
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| Q |
95 |
ccgaatttgtgaaagaagacttttgagaaacaa |
127 |
Q |
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| T |
12194435 |
ccgaatttgtgaatgaag-cttttgagaaacaa |
12194404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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