View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_21 (Length: 444)
Name: NF2495_low_21
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Original strand, 30090767 - 30091183
Alignment:
| Q |
18 |
ataaccgttatcccttatttgattttttgtattatccaaaggattagctgtggttatcaatgcagaccttatagcagcagaactccattgtgggtgtgca |
117 |
Q |
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| T |
30090767 |
ataaccgttatcccttattagattttttgtattatccaaaggattagctgtggttatcaatgcagatcttatagcagcagaactccattgtggatgtaca |
30090866 |
T |
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| Q |
118 |
gctttgagaagagcagcaacaccagaggcatgaggacaagccatggatgttcctgacatgaaattgtagtcacttgataagaacacatcggtaccaattc |
217 |
Q |
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| T |
30090867 |
gctttgagaagagcagcaacaccagaggcatgaggacaagccatggatgttcctgacatgaaattgtagtcacttgataagaacacatcggtaccaattc |
30090966 |
T |
|
| Q |
218 |
tagctgttggtttataaggaacaaaagcagcgagaactcttgatccaggtgccattatgtcaggcttcaaaatccatggaaagccatgtgatggacctct |
317 |
Q |
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| T |
30090967 |
tagctgttggtttataaggaacaaaagcagcgagaactcttgatccaggtgccattatgtcaggcttcaaaatccaaggaaagccatgtgatggacctct |
30091066 |
T |
|
| Q |
318 |
tgatgagtaatgagctgcaattggtgccggttttattccaagaaatgtttgttgaaacttaatgcttgctgttggattattcttattgcgttttgcgtac |
417 |
Q |
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| T |
30091067 |
tgatgagtaatgagctgcaattggtgccggttttattccaagaaatgtttgttgaaacttaatgcttgctgttggattattcttattgcgttttgcgtac |
30091166 |
T |
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| Q |
418 |
ttgatcacaggttctgc |
434 |
Q |
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| T |
30091167 |
ttgatcacagattctgc |
30091183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 30100148 - 30099772
Alignment:
| Q |
19 |
taaccgttatcccttatttgattttttgtattatccaaaggattagctgtggttatcaatgcagaccttatagcagcagaactccattgtgggtgtgcag |
118 |
Q |
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||||| ||||||||||| | |||| |||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
30100148 |
taaccattatcccttatagggttttgtgtattgtctaaaggattagctgtggttatcaatgcagaccttatagcagcagcactccattgtggatgtgcag |
30100049 |
T |
|
| Q |
119 |
ctttgagaagagcagcaacaccagaggcatgaggacaagccatggatgttcctgacatgaaattgtagtcacttgataagaacacatcggtaccaattct |
218 |
Q |
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||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
30100048 |
ctttgagaagagcagcaacaccagaaacatgaggacaagacatggatgttcctgacatgaaattgtagtcacttgataagaacacatttgtgccaattct |
30099949 |
T |
|
| Q |
219 |
agctgttggtttataaggaacaaaagcagcgagaactcttgatccaggtgccattatgtcaggcttcaaaatccatggaaagccatgtgatggacctctt |
318 |
Q |
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| T |
30099948 |
agctgttggtttgttaggaatataagctgcaagaactcttgatccaggtgccattatatcaggtttcaaaatccatggatagctatgtgaaggacctctt |
30099849 |
T |
|
| Q |
319 |
gatgagtaatgagctgcaattggtgccggttttattccaagaaatgtttgttgaaacttaatgcttgctgttggatt |
395 |
Q |
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|||||||||| |||||| ||||||||| ||| |||| | ||||||||||||||| || ||||||| ||| ||||| |
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| T |
30099848 |
gatgagtaatatgctgcagctggtgccggctttgttcctacaaatgtttgttgaaatttgatgcttgatgtaggatt |
30099772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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