View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_25 (Length: 433)
Name: NF2495_low_25
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 5849184 - 5849593
Alignment:
| Q |
18 |
aaatatgtttgaaaaacaaagaaacatgttcgaaaacatgttatctcactcttgtatgtgataaaatatgatcatctctcttttgaaagcaatgtattaa |
117 |
Q |
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| T |
5849184 |
aaatatgtttgaaaaacaaagaaacatgttcgaaaacattttatctcactcttgtatgtgataaaatatgatcatctctcttttgaaagcaatgtattaa |
5849283 |
T |
|
| Q |
118 |
ctatagtaagaccaaaaggtggcaaaaaatatagggtatatttaccctccatttacctcctcaagaccatacttctcatgcaagcccttaaaacattttc |
217 |
Q |
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| T |
5849284 |
ctatagtaagatcaaaaggtggcaaaaaatatagggtatatttaccctccatttacctcctcaagaccatacttctcatgcaagcccttaaaacattttc |
5849383 |
T |
|
| Q |
218 |
gatacacttccagcatgcccatttagctctcctcctagacaaatcttttcttagtgttgtatcttgaagtaagccttttaagttctccttaaactttact |
317 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5849384 |
gatacacttcctgcatgcccatttagctctccttctagacaaatcttttcttagtgttgtatcttgaagtaagtcttttaagttctccttaaactttact |
5849483 |
T |
|
| Q |
318 |
ttaaagtgttctttgaaccttacataaggtgcgtaagcatgaatagcataaaaggtgtcttgttctatgacaatttcagggctatgacccaatctcatat |
417 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5849484 |
ttaaagtattcttccaaccttacataaggtgcgtaagcatgaataacataaaaggtatcttgttctatgacaatttcagggccatgacccaatctcatat |
5849583 |
T |
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| Q |
418 |
cctatgctac |
427 |
Q |
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||| |||||| |
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| T |
5849584 |
cctttgctac |
5849593 |
T |
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