View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_27 (Length: 425)
Name: NF2495_low_27
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 15 - 406
Target Start/End: Original strand, 5547539 - 5547930
Alignment:
| Q |
15 |
aagaagttgatttatacacaaagtttgaagttcaacttcgattgtcaatgtcatgatctctctgataaatgatttgttaggacttttgttaaaactcgtt |
114 |
Q |
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| T |
5547539 |
aagaagttgatttatccacaaagtttggagttcaacttcgattgtcaatgtcatgatctctttgataaatgatttgtaaggacttttgttaaagctcgtt |
5547638 |
T |
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| Q |
115 |
gaaccttaagatctctctgaccctgatgagtttcgaagttcaacttatctaaactttcaagtaaaaaatgaagtaccgtctaaaacttaaactcacatct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
5547639 |
gaaccttaagatctctctgaccctgatgagtttcgaagttcaacttatctaaactttcaagtaaaaaatgaagtaccgtctaaaacctaaactcatatct |
5547738 |
T |
|
| Q |
215 |
ataaagttttaaatctgaatccaaacaaaaatgtgcattcaataatatcgatattacgagcggagttacataatgaacagggtccaccattttcatatgt |
314 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5547739 |
ataaagttttatatctgaatccaaacaaaaatgtgcattcaataatatcgatatttcgagcggagttacataatgaacagggtccaccattttcatatgt |
5547838 |
T |
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| Q |
315 |
gaccnnnnnnnnttcctactctcacatatgaatcaaaactataaactttgatgaaattttatggatcatagcctacctaagcaagtccctcc |
406 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5547839 |
gaccaaaaaaaattccaactctcacatatgaatcaaaactataaactttgatgaaattttatggatcatagcctacctaagcaagtccctcc |
5547930 |
T |
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