View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_29 (Length: 410)
Name: NF2495_low_29
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 394
Target Start/End: Complemental strand, 5849129 - 5848743
Alignment:
| Q |
8 |
gatatgaagtcgtgatgggtctccacagttcaaatggtggcttttgaagtaagtaaaacaatggatttttctacactagattttagagagattgtgagct |
107 |
Q |
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| T |
5849129 |
gataagaagtcgtgatgggtctccacagttcaaatggtggcttttgaagtaagtaaaacaatggatttttctacactagattttagagagattgtgagct |
5849030 |
T |
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| Q |
108 |
accacaagaaaatgtaaatgatatgtgagacaagattggatggaggattagaaaagtaacaagaaagaagttgggagaatcaagaaattttcgaactacg |
207 |
Q |
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| T |
5849029 |
accacaagaaaatgtaaatgatatgtgagacaagattggacggaggattagaaaagtaacaagaaagaagttgggagaatcaagaaattttcgaactacg |
5848930 |
T |
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| Q |
208 |
ggataagaatattggtgatggaacgaaaatgttcaaagttataaataaaatggaatattttaaagattggtctatttgtgaaaatgccgaaaattagaaa |
307 |
Q |
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| T |
5848929 |
ggataagaatattggtgatggaacgaaaatgttcaaagttataaataaaatggaatattttaaagattggtctattagtgaaaatgccgaaaattagaaa |
5848830 |
T |
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| Q |
308 |
aattataagaaagttttctagctttccaaaattttcaaaccgttgcatgcatgtcaaattagagttagcgatttccaatgtttcttg |
394 |
Q |
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| T |
5848829 |
aattttaagaaagttttctagctttccaaatttttcaaactgttgcatgcatgtcaaatcagagttagcgatttccaatgtttcttg |
5848743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 21913553 - 21913644
Alignment:
| Q |
154 |
attagaaaagtaacaagaaagaagttgggagaatcaagaaattttcgaactacgggataagaat-attggtgatggaacgaaaatgttcaaag |
245 |
Q |
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|||||||||||| ||| | ||||||||||||||||||||| |||| ||||| ||| ||| ||| |||||| | |||||||||||||||||| |
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| T |
21913553 |
attagaaaagtagcaaaagagaagttgggagaatcaagaagtttt-gaacttaggggtaaaaatccttggtggtagaacgaaaatgttcaaag |
21913644 |
T |
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