View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_32 (Length: 400)
Name: NF2495_low_32
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 41234620 - 41235003
Alignment:
| Q |
1 |
agagaagataagagtgagttaaattgtttgatgctactatccaaagttggtgaaacaaaagagcctaatacattgaaagaatgtggttttaagtgcaaaa |
100 |
Q |
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| T |
41234620 |
agagaagataagagtgagttaaattgtttgatgctactatccaaagttggtgaaacaaaagagcctaatacattgaaagaatgtggttttaagtgcaaaa |
41234719 |
T |
|
| Q |
101 |
catgcaacaaagaattctcttcttttcaagctttaggtggccatagagcaagtcacaagagaccaaaactcatgtacaagttaccaaacatgaaaccaaa |
200 |
Q |
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| T |
41234720 |
catgcaacaaagaattctcttcttttcaagctttaggtggccatagagcaagtcacaagagaccaaaactcatgtacaagttaccaaacatgaaaccaaa |
41234819 |
T |
|
| Q |
201 |
gatgcatccatgccctatttgtggacttgagttttccattggacaagctcttggtggccacatgagaaagcataatagtagcttttccatcttc-nnnnn |
299 |
Q |
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| T |
41234820 |
gatgcatccatgccctatttgtggacttgagttttccattggacaagctcttggtggccacatgagaaagcataatagtagtttttccatcttcaaaaaa |
41234919 |
T |
|
| Q |
300 |
nnnnnnnnnnnccattgtgaaaggttgaatttttgcttggacttgaacttgacgccgttagagaatggtcttgtttggacttgt |
383 |
Q |
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| T |
41234920 |
tcaaaaaaagaccattgtgaaaggttgaatttttgcttggacttgaacttgacgccgttagagaatggtcttgtttggacttgt |
41235003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 40689687 - 40689761
Alignment:
| Q |
94 |
tgcaaaacatgcaacaaagaattctcttcttttcaagctttaggtggccatagagcaagtcacaagagaccaaaa |
168 |
Q |
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| T |
40689687 |
tgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaagaaaccaaaa |
40689761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 40243844 - 40243776
Alignment:
| Q |
94 |
tgcaaaacatgcaacaaagaattctcttcttttcaagctttaggtggccatagagcaagtcacaagaga |
162 |
Q |
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|||||||| ||||||||| ||||||| ||||||||||| | ||||||||||| || || ||||||||| |
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| T |
40243844 |
tgcaaaacgtgcaacaaaaaattctcatcttttcaagcccttggtggccatagggctagccacaagaga |
40243776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 9612909 - 9612877
Alignment:
| Q |
126 |
tcaagctttaggtggccatagagcaagtcacaa |
158 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
9612909 |
tcaagcattaggtggccatagagcaagtcacaa |
9612877 |
T |
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