View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_33 (Length: 398)
Name: NF2495_low_33
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 384
Target Start/End: Complemental strand, 53704973 - 53704605
Alignment:
| Q |
16 |
ctcaatgaaacccctcagattcgtctttttaatcccttaacatgtgtcactctttttcttcctcctattcacactttccctaatgtggtaagctttgatt |
115 |
Q |
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| T |
53704973 |
ctcaatgaaacccctcagattcgtctttttaatcccttaacatgtgtcactctttttcttcctcctattcacactttccctaacgtggtaagctttgatt |
53704874 |
T |
|
| Q |
116 |
attcaaatatcggtcgtgagtattcggttacaaacgatagttatttaagattttttagtttgagacaaatgtgtgatgatttcatagctaaaattgtatt |
215 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53704873 |
attcaaatatcggccgtgagtattcggttacaaacgatagttatttaagattttttagtttgagacaaatgtgtgatgatttcatagctaaaattgtatt |
53704774 |
T |
|
| Q |
216 |
ttcaacaagcccttcgcttagcgatgaattcgttgcacttgctattgttgatgtttatagttgtaataatctggctttctgtaaaaaaggttatgattct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53704773 |
gtcaacaagcccttcgcttagcgatgaattcgttgcacttgctattgttgatggttatagttgtaataatctggctttctgtaaaaaaggttatgattct |
53704674 |
T |
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| Q |
316 |
tggattttcctaaccaaaaagaatgattactatttttgggaagatgttgtgtattacaatggattgttt |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53704673 |
tggattttcctaaccaaaaagaatgattactatttttgggaagatgttgtgtattacaatggattgttt |
53704605 |
T |
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