View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_36 (Length: 377)
Name: NF2495_low_36
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 14773142 - 14773491
Alignment:
| Q |
18 |
ccatcaaacaatgaagtacatcaatatgcatgtacaattacgtatatgacaatgcagatagataaaataatgaaaaataccatagttgcctcttggatag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14773142 |
ccatcaaacaatgaagtacatcaatatgcatgtacaattacgtatatgacaatgcagatagataaaataatgaaaaataccatagttgcctcttggatag |
14773241 |
T |
|
| Q |
118 |
ccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtcttctccatgacgagcaatttttaacaagagttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14773242 |
ccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtcttctccatgacgagcaatttttaacaagagttc |
14773341 |
T |
|
| Q |
218 |
aaatgatgccttccttgaagactcatcagacctaaaattaatatttagtcagctgagctctatgcaaccaataattttggtcatctgagctctagacacc |
317 |
Q |
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| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
14773342 |
agatgatgccttccttgaagtctcatcagacctaaaattaatatttagtcagctgagctctatgcaaccaataattttagtcagctgagctctagacacc |
14773441 |
T |
|
| Q |
318 |
gagggagtaatttaaaataattaggttgaaaaatcaacccataatctgtg |
367 |
Q |
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| T |
14773442 |
gagggagtaatttaaaataattaggttgaaaaatcaacccataatctgtg |
14773491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 33 - 275
Target Start/End: Original strand, 15014561 - 15014800
Alignment:
| Q |
33 |
gtacatcaatatgcatgtacaattacgtatatgacaatgcagatagataaaataatgaaaaataccatagttgcctcttggatagccattgtaaatgaat |
132 |
Q |
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| T |
15014561 |
gtacagcaatatgcatgttcaattatgtatatgatcattcaaatgaataaaataatgaaaaataccatagttgtctcttgtatagccattgtaaatgaat |
15014660 |
T |
|
| Q |
133 |
cttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtcttctccatgacgagcaatttttaacaagagttcaaatgatgccttcct |
232 |
Q |
| |
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| |||||||| ||| || ||||| |||||||||| |||||||| || |||||||||||||||| |||||||||| ||||||||||| |||||| ||||| |
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| T |
15014661 |
cctgatcatcattaactgcaactgtaagacagggcacctgaaagccggtgtcttctccatgaccagcaatttttgacaagagttcagatgatgtcttcca |
15014760 |
T |
|
| Q |
233 |
tgaagactcatcagacctaaaattaatatttagtcagctgagc |
275 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||| |
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| T |
15014761 |
tgaaga---atcagacctaaaattaatatttagtcagctgagc |
15014800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 275
Target Start/End: Original strand, 15047326 - 15047564
Alignment:
| Q |
37 |
atcaatatgcatgtacaattacgtatatgacaatgcagatagataaaataatgaaaaataccatagttgcctcttggatagccattgtaaatgaatcttg |
136 |
Q |
| |
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||||||||||||||| ||||| | |||||| ||||| | |||| |||||||||||| ||||| | |||| ||| |||||||||||||||||| |
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| T |
15047326 |
atcaatatgcatgtagaattatgaatatgaacatgcaaaggaataagtgaatgaaaaatactgtagtttcttcttctataaccattgtaaatgaatcttt |
15047425 |
T |
|
| Q |
137 |
atcatctttagctacaactataagacagggtacctgaaaaccagtgtcttctccatgacgagcaatttttaacaagagttcaaatgatgccttccttgaa |
236 |
Q |
| |
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||||||||||||| | || |||||||| || |||||||| ||||| ||||| || || | | | |||||||||||||| ||| | |||||||||| |||| |
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| T |
15047426 |
atcatctttagctgctaccataagacaaggcacctgaaagccagtatcttccccgtgtctaacgatttttaacaagagctcatacgatgccttccatgaa |
15047525 |
T |
|
| Q |
237 |
gactcatcagacctaaaattaatatttagtcagctgagc |
275 |
Q |
| |
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||||| |||||||| | || |||| |||||||| ||||| |
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| T |
15047526 |
gactcgtcagacctgagatgaataattagtcagttgagc |
15047564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 85 - 278
Target Start/End: Original strand, 17879644 - 17879839
Alignment:
| Q |
85 |
taatgaaaaataccatagttgcctcttggatagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtc |
184 |
Q |
| |
|
|||||||||||||| ||| | ||| | ||| |||||||||||||||| | ||||||||||||| | || |||||||| || | || ||| ||||| | |
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|
| T |
17879644 |
taatgaaaaataccccagtcgtttctcgtatacccattgtaaatgaatccttatcatctttagctgccaccataagacaaggcatctcaaagccagtata |
17879743 |
T |
|
| Q |
185 |
ttctccatgacgagcaatttttaacaagagttcaaatgatgccttccttgaagactcatcagacc--taaaattaatatttagtcagctgagctct |
278 |
Q |
| |
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|||||| ||||||||||| |||||||||| ||| || | || ||||||||||||||||| ||| || ||||| ||||||||| |||||| |
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| T |
17879744 |
agttccatgctcagcaatttttaccaagagttcatatgcagcatcccatgaagactcatcagacctataagatgaatatctagtcagctaagctct |
17879839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 91 - 269
Target Start/End: Original strand, 51365480 - 51365658
Alignment:
| Q |
91 |
aaaataccatagttgcctcttggatagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtcttctcc |
190 |
Q |
| |
|
|||||||| |||||| |||||| | |||||||| |||||||| || |||||||||||| |||||||||| ||||| |||| ||| ||||| | |||||| |
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| T |
51365480 |
aaaataccctagttgactcttgtacagccattggaaatgaatactggtcatctttagctgcaactataaggcagggcaccttaaagccagtatgttctcc |
51365579 |
T |
|
| Q |
191 |
atgacgagcaatttttaacaagagttcaaatgatgccttccttgaagactcatcagacctaaaattaatatttagtcag |
269 |
Q |
| |
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|||||||||||||| || | ||||| | | |||||||||| ||| ||||||| ||||||||||| ||||||||||||| |
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| T |
51365580 |
atgacgagcaatttctacaaggagtttagacgatgccttccatgaggactcattagacctaaaatgaatatttagtcag |
51365658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 87 - 225
Target Start/End: Complemental strand, 53869070 - 53868932
Alignment:
| Q |
87 |
atgaaaaataccatagttgcctcttggatagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtctt |
186 |
Q |
| |
|
|||||||||||| ||||| |||||| ||||||||| ||||||||| || |||||||||||| |||||||||| || || |||| ||| ||| | |||| |
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| T |
53869070 |
atgaaaaataccctagttaactcttgtgtagccattggaaatgaatcctgttcatctttagctgcaactataaggcaaggcacctcaaagccattatctt |
53868971 |
T |
|
| Q |
187 |
ctccatgacgagcaatttttaacaagagttcaaatgatg |
225 |
Q |
| |
|
|||| ||||||||||||| || | ||||||| |||||| |
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|
| T |
53868970 |
ctccgtgacgagcaatttctacaaggagttcagatgatg |
53868932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 85 - 266
Target Start/End: Original strand, 54158187 - 54158368
Alignment:
| Q |
85 |
taatgaaaaataccatagttgcctcttggatagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtc |
184 |
Q |
| |
|
||||||||| |||| |||| | |||||| |||||||||||||||| | || ||||||||||| |||||||||| || || |||| ||| |||| || |
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| T |
54158187 |
taatgaaaattaccctagtagactcttgtgcagccattgtaaatgaaacctggtcatctttagcagcaactataaggcaaggcacctcaaagccagaatc |
54158286 |
T |
|
| Q |
185 |
ttctccatgacgagcaatttttaacaag-agttcaaatgatgccttccttgaagactcatcagacctaaaattaatatttagt |
266 |
Q |
| |
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|
| T |
54158287 |
ttctccatgagcagcaatatct-acaagaagtttagatgatgccctccatgaggactcatcagacctacaataaatatttagt |
54158368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 51 - 285
Target Start/End: Complemental strand, 36877393 - 36877159
Alignment:
| Q |
51 |
acaattacgtatatgacaatgcagatagataaaataatgaaaaataccatagttgcctcttggatagccattgtaaatgaatcttgatcatctttagcta |
150 |
Q |
| |
|
||||||| |||||||| ||||| || |||| ||| |||||||||| |||||| |||||| ||||||| || ||||| ||| ||||||| |||||| |
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|
| T |
36877393 |
acaattatgtatatgatcatgcaaattaataagttaacgaaaaataccctagttgactcttgtatagccaatgcaaatggatccagatcatccttagctg |
36877294 |
T |
|
| Q |
151 |
caactataagacagggtacctgaaaaccagtgtcttctccatgacgagcaatttttaacaagagttcaaatgatgccttccttgaagactcatcagacct |
250 |
Q |
| |
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|||||||||||||||| |||| | | ||||| | ||||||||||| |||||| | || |||||| ||| ||||| | ||| |||||||||||||||||| |
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|
| T |
36877293 |
caactataagacagggcacctcatagccagtattttctccatgaccagcaatctgtaccaagagatcatatgatactctccatgaagactcatcagacct |
36877194 |
T |
|
| Q |
251 |
aaaattaatatttagtcagctgagctctatgcaac |
285 |
Q |
| |
|
||||| ||| |||| |||||| |||| ||| |||| |
|
|
| T |
36877193 |
aaaataaatttttaatcagctaagctttatacaac |
36877159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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