View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_38 (Length: 371)
Name: NF2495_low_38
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 25492664 - 25493019
Alignment:
| Q |
1 |
tgaaacaagccaaggggaaagaaactgatctctttaatcttggccttattccttaaagtccatgatgaagnnnnnnnnnn-caatatataattctccaat |
99 |
Q |
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| T |
25492664 |
tgaaacaagccaaggggaaagaaactgatctctttaatcttggccttattacttaaagtccatgatgaagaaataaaaaaacacaatataattctcctat |
25492763 |
T |
|
| Q |
100 |
ccctgagaggtaattatcttcttaaacatgatatgacaatattaattgaaaattatttaccaataccatcgttaattactgaccaacaacatggttaatt |
199 |
Q |
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| T |
25492764 |
ccctgagaggtaattatcttcttaaacatgatatgacaatattaattgaaaattatttactaataccatcgttaattactgactaacaacatggttaatt |
25492863 |
T |
|
| Q |
200 |
aacgatgtatcactagcacattatcggtaagatgcatctaacttggttaaccattttcaattaatatgttgcaacatttttcttgtataattaattgttt |
299 |
Q |
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| T |
25492864 |
aacgatgtatcactggcacattatcggtaagctgcatctaacttagttaaccatggccaattaatatgttgcaacatgtttcttgtataattaattgttt |
25492963 |
T |
|
| Q |
300 |
caatttggtctctccctgtacttacaatacaacaaaaatgagatttagtaacattt |
355 |
Q |
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| T |
25492964 |
cagtttggcctctccatgtacttacactacaataaaaatgagatttagtaacattt |
25493019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 25501043 - 25501366
Alignment:
| Q |
1 |
tgaaacaagccaaggggaaagaaactgatctctttaatcttggccttattccttaaagtccatg----atgaagnnnnnnnnnncaatatataattctcc |
96 |
Q |
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| T |
25501043 |
tgaaacaagccaaggggaaagtaactaatctctttaatcttggcctttttacttaaagtccatccataatgaagaaaaaaaacacaatata--attctcc |
25501140 |
T |
|
| Q |
97 |
aatccctgagaggtaattatcttcttaaacatgatatgacaatattaattgaaaattatttaccaataccatcgttaattactgaccaacaacatggtta |
196 |
Q |
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| T |
25501141 |
tagccctgag--gtaattatcttcttaaacatgatatgacaatattatatgaaaattatttaccaataccatcgttaattactgactaacaacatggtta |
25501238 |
T |
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| Q |
197 |
attaacgatgtatcactagcacattatcggtaagatgcatctaac-ttggttaaccattttcaattaatatgttgcaacatttttcttgtataattaatt |
295 |
Q |
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||||||||||||||||| |||||| |||| ||||||||||| || ||||||||| | | |||||||||||| |||| |||||||||||||||| | |
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| T |
25501239 |
attaacgatgtatcactgatccattattggtattatgcatctaactttagttaaccatgtccgattaatatgttgggacatgtttcttgtataattaact |
25501338 |
T |
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| Q |
296 |
gtttcaatttggtctctccctgtactta |
323 |
Q |
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| T |
25501339 |
gtttcaatttggcctctccctgtactta |
25501366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 25642470 - 25642509
Alignment:
| Q |
8 |
agccaaggggaaagaaactgatctctttaatcttggcctt |
47 |
Q |
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| T |
25642470 |
agccaaggggaaagaaactgatctctttaatcttggcctt |
25642509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 25450015 - 25450055
Alignment:
| Q |
7 |
aagccaaggggaaagaaactgatctctttaatcttggcctt |
47 |
Q |
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| T |
25450015 |
aagccaaggggaaggaaactgatctctttaatcttggcctt |
25450055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 25450102 - 25450155
Alignment:
| Q |
108 |
ggtaattatcttcttaaacatgatatg--acaatattaattgaaaattatttac |
159 |
Q |
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| T |
25450102 |
ggtaattatgttcttaaacatgatatgccacaatattaattgaaaactatttac |
25450155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 137
Target Start/End: Original strand, 25429355 - 25429385
Alignment:
| Q |
107 |
aggtaattatcttcttaaacatgatatgaca |
137 |
Q |
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| T |
25429355 |
aggtaattatcttcttaaacatgatatgaca |
25429385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 25473881 - 25473844
Alignment:
| Q |
10 |
ccaaggggaaagaaactgatctctttaatcttggcctt |
47 |
Q |
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| T |
25473881 |
ccaagggaaaagaaaccgatctctttaatcttggcctt |
25473844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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