View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_39 (Length: 360)
Name: NF2495_low_39
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 343
Target Start/End: Original strand, 48407977 - 48408304
Alignment:
| Q |
20 |
ttcagctagggaaaacatactttcatggtgtggattgatatggtgtccaccaaaaattcaattattactcaaaactgggatagatttaccatcacccacg |
119 |
Q |
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| T |
48407977 |
ttcagctagggaaaacataccttcatggtgtggaatgatatggtgtccaccaaaaattcaattatcactcaaaactgggatagatttaccatcacccacg |
48408076 |
T |
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| Q |
120 |
ctccaccgacttccggcttttaagatgaattttgatttataaatgcttctccaaacaaaactatgattatgttcaaaatttgaatcgagaaaattacacc |
219 |
Q |
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| T |
48408077 |
ctccaccgacttccggcttttaagatgaattttgatttacaaatgcttctccaaacaaaattagaattatgttcaaaatttgaatcgagaaaattacacc |
48408176 |
T |
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| Q |
220 |
tcagatagtatctagctttatacattcttacgtcaagagttacacttctggagaccaaaaccatggtctatccagcctttcaataaaacaa----tagtt |
315 |
Q |
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| T |
48408177 |
tcagatagtatctagctttatacattcttacgtcaagagttacacttctggagaccaaaaccatggtctatccagcctttcaataaaacaaggagtagtt |
48408276 |
T |
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| Q |
316 |
tcaaatttatgaatataatgcggaccta |
343 |
Q |
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| T |
48408277 |
tcaaatttatgaatataatgcggaccta |
48408304 |
T |
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