View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_40 (Length: 352)
Name: NF2495_low_40
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_40 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 352
Target Start/End: Original strand, 41380205 - 41380542
Alignment:
| Q |
16 |
attacaaaacctagctcatataatgtatctgtagtttaattttctcatctatttttacactttctaagttttgtacttcattcaagcatctattatagat |
115 |
Q |
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| T |
41380205 |
attacaaaacctagctcatataatgtatctgtagtttaattttctcatccatttttacactttctaagttttgtacttcattcaagcatctattatagat |
41380304 |
T |
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| Q |
116 |
gctatacaaacaccaaccaaagtctcaccaaaaaa-gcttcacttaaaacatttaagcaagnnnnnnnnnntcattgaatcttccacacacaaaa-atat |
213 |
Q |
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| T |
41380305 |
gctatacaaacaccaaccaaagtctccccaaaaaaagcttcacttaaaacatttaagcaagaaaaaaaaa-tcattgaatcttccacacacaaaaaatat |
41380403 |
T |
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| Q |
214 |
cattgaatagaagcaatttccttcatttgttcttcaattgaaactcaattatgtacattgaaattggaaaatagatagtttattggcagcaaataaatca |
313 |
Q |
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| T |
41380404 |
cattgaatacaagcaatttccttcatttgttcttcaattgaaactcaattatgtacattgaaattggaaaatagatagtttattggcagcaaataaatca |
41380503 |
T |
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| Q |
314 |
atcatagagaaaatagacatcatcattgccaaggagttt |
352 |
Q |
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| T |
41380504 |
atcatagagaaaatagacatcatcattgtcaaggagttt |
41380542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 8043819 - 8043677
Alignment:
| Q |
186 |
tcattgaatcttccacacacaaaaa-tatcattgaatagaagcaatttccttcattt-gttcttcaattgaaactcaattatgtacattgaaattggaaa |
283 |
Q |
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| T |
8043819 |
tcattgaatcttccacacacaaaaaatatcattgaatagaaacaatttccttcattttgttctaccattgaaactcaaatatgtacattgaaattgaaaa |
8043720 |
T |
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| Q |
284 |
atagatagtttattggcagcaaataaatcaatcatagagaaaa |
326 |
Q |
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| T |
8043719 |
atagatagttcattggcagaaaataaacaaatcatagagaaaa |
8043677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 253 - 326
Target Start/End: Complemental strand, 8033814 - 8033741
Alignment:
| Q |
253 |
gaaactcaattatgtacattgaaattggaaaatagatagtttattggcagcaaataaatcaatcatagagaaaa |
326 |
Q |
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| T |
8033814 |
gaaactcagttatgtacattgaaattggaaaatagatagttcattggcagaaaataaataaatcatagagaaaa |
8033741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 253 - 347
Target Start/End: Original strand, 7969970 - 7970065
Alignment:
| Q |
253 |
gaaactcaattatgtacattgaaattggaaaatagatagtttattggcagcaaata-aatcaatcatagagaaaatagacatcatcattgccaagg |
347 |
Q |
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| T |
7969970 |
gaaactcagttatgtgcattgaaattggaaaatagatagttcattgccagaaaatagagaaaagcatagagaaaatagatatcatcattgtcaagg |
7970065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 8043989 - 8043890
Alignment:
| Q |
16 |
attacaaaacctagctcatataatgtatctgtagtttaa-ttttctcatctatttttacactttctaagttttgtacttcattcaagcatctattataga |
114 |
Q |
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| T |
8043989 |
attataaaacctaactcatattatgtatctgtagtttaatttttctcatcctttttcatagtttctatgtgttgtacatcaatcaagcatctattataga |
8043890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 8034013 - 8033905
Alignment:
| Q |
16 |
attacaaaacctagctcatata----atgtatctgtagtttaattttctcatctattttt---acactttctaagttttgtacttcattcaagcatctat |
108 |
Q |
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| T |
8034013 |
attacaaaacctagctcatatatataatgtatctgtagcttaattt-ctcatttttttttttaatactttctaa-ttttgtacttcaaccaagcatctat |
8033916 |
T |
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| Q |
109 |
tatagatgcta |
119 |
Q |
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| T |
8033915 |
tatagatgcta |
8033905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 7969767 - 7969879
Alignment:
| Q |
16 |
attacaaaacctagctcatata----atgtatctgtagtttaattttctcatctat-------ttttacactttctaagttttgtacttcattcaagcat |
104 |
Q |
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| T |
7969767 |
attacaaaacctagctcatatatataatgtatctgtagcttaattt-ctcatatatatatttttttaatactttctaa-ttttgtacttcaatcaagcat |
7969864 |
T |
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| Q |
105 |
ctattatagatgcta |
119 |
Q |
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| T |
7969865 |
ctattatagatgcta |
7969879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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