View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_41 (Length: 349)
Name: NF2495_low_41
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 17657385 - 17657571
Alignment:
| Q |
14 |
aaataacaaaagaaaacatgtctaacaaaacattaatgctcacatcatgaatttataaggttatatgggagaacaaggaaatggctgaagatggattgcc |
113 |
Q |
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| T |
17657385 |
aaataacaagagaaagcatgtctaacaaaacattaatgctcacatcatgaatttataaggttatatgggagaacaaggaaatggctgaagatggattgcc |
17657484 |
T |
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| Q |
114 |
acatttgatctacatatctagagagaagaggccaaagcaaccacatcattttaaagctggtgccatgaatgtgttggtaaattcttt |
200 |
Q |
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| T |
17657485 |
acatttgatctacatatctagagagaagaggccaaagcaaccacatcatttcaaagccggtgccatgaatgtgttggtaaattcttt |
17657571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 271 - 331
Target Start/End: Original strand, 17657643 - 17657703
Alignment:
| Q |
271 |
tatttagacaagagtctctgggttgattaccaatgcacccttcatgttgaacgtggattgt |
331 |
Q |
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| T |
17657643 |
tattcagacaagagtctctgggttgattaccaatgcacccttcatgttgaacgtggattgt |
17657703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 37008901 - 37008829
Alignment:
| Q |
121 |
atctacatatctagagagaagaggccaaagcaaccacatcattttaaagctggtgccatgaatgtgttggtaa |
193 |
Q |
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| T |
37008901 |
atctacatatctagagagaagaggccaaaacaaccacatcatcacaaagctggtgcaatgaatgtcttggtaa |
37008829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 37035808 - 37035761
Alignment:
| Q |
103 |
gatggattgccacatttgatctacatatctagagagaagaggccaaag |
150 |
Q |
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| T |
37035808 |
gatggattgcctcacttaatctacatatctagagagaagaggccaaag |
37035761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 37045066 - 37045019
Alignment:
| Q |
103 |
gatggattgccacatttgatctacatatctagagagaagaggccaaag |
150 |
Q |
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| T |
37045066 |
gatggattgcctcatttaatctacatatccagagagaagagaccaaag |
37045019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 37044891 - 37044843
Alignment:
| Q |
276 |
agacaagagtctctgggttgattaccaatgcacccttcatgttgaacgt |
324 |
Q |
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| T |
37044891 |
agacaagagtctctggattgatgaccaatgctccttttatgttgaacgt |
37044843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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