View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_42 (Length: 349)
Name: NF2495_low_42
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 276
Target Start/End: Complemental strand, 42895250 - 42894982
Alignment:
| Q |
8 |
attatactcgtggatacacatgacctagaaatgatggatattaaaatatatttttcttattaaaaaatcaaacactattataagaaaaattcccccattg |
107 |
Q |
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| T |
42895250 |
attatactcgtggatacacatgacctagaaatgatggatattaaaatatatttttcttattaaaaactcaaacactattataagaaaaattcccccattg |
42895151 |
T |
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| Q |
108 |
actacctataggggatctgaatgaaatcagaaaattaaatttgctatgatgatcgaaattgttagcaagcaatcttaaataaagtcaactttcacattta |
207 |
Q |
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| T |
42895150 |
actacctataggggatctgaatgaaattagaaaattaaatttgctatgatgatcgaaattgttagcaagcaatcttaaataaagtcaactttcacattta |
42895051 |
T |
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| Q |
208 |
attaccctcattagttgccaaccatttagtcttaaatttcaacgtgcaattccttctctctctaattac |
276 |
Q |
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| T |
42895050 |
attaccctcattagttgccaaccatttagtcttaaatttcaacgtgcaattccttctctctctaattac |
42894982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 42894958 - 42894923
Alignment:
| Q |
300 |
ggtcaaatgcacgtaaataattttcttaattatata |
335 |
Q |
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| T |
42894958 |
ggtcaaatgcacgtaaataattttcttaattatata |
42894923 |
T |
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