View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_43 (Length: 347)
Name: NF2495_low_43
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 3 - 331
Target Start/End: Complemental strand, 52488211 - 52487885
Alignment:
| Q |
3 |
cataggactacattttaacctgattttttggttctaatttgcattttactgtgattcaattagaatagttgtctgcatgcagatggttcttagtggtaaa |
102 |
Q |
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| T |
52488211 |
cataggactacattttaacctgattttttggttctaatttgcattttactgtgattcaattagaat--ttgtctgcatgcagatggttcttagtggtaaa |
52488114 |
T |
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| Q |
103 |
gtgcaatgttctaaacaaatcgtaacaatttccaacgacggggggagggtgattgaatgtgataaaacatcttttccaaaggtacagtttttcatttcta |
202 |
Q |
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| T |
52488113 |
gtgcagtgttctaaacaaatcgtaacaatttccaacgacggggggagggtgattgaatgtgataaaacatcttttccaaaggtacagtttttcatttcta |
52488014 |
T |
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| Q |
203 |
tcttagacactgcatgatgtgatgtaataattatcacatatactataatcctttgaattttggtttctgaatacagataagaagtggctatacatctact |
302 |
Q |
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| T |
52488013 |
tcttagacactgcatgatgtgatgtaataattatcacatatactataatcctttgaattttggtttctgagtacagataagaagtggctatacatctact |
52487914 |
T |
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| Q |
303 |
ggagaatcagtatctgaagttgaagatat |
331 |
Q |
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| T |
52487913 |
ggagaatcagtatctgaagttgaagatat |
52487885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 192
Target Start/End: Complemental strand, 7208904 - 7208781
Alignment:
| Q |
69 |
agttgtctgcatgcagatggttcttagtggtaaagtgcaatgttctaaacaaatcgtaacaatttccaacgacggggggagggtgattgaatgtgataaa |
168 |
Q |
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| T |
7208904 |
agttgtttgtatgcagatggttctcaatggtgaaatacaatgttctagacagatagtaactatttctaatgatgaggggacagtgattgaatgtgataag |
7208805 |
T |
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| Q |
169 |
acatcttttccaaaggtacagttt |
192 |
Q |
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| T |
7208804 |
gcatcctttccaatggtatagttt |
7208781 |
T |
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