View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_44 (Length: 346)
Name: NF2495_low_44
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 9 - 328
Target Start/End: Original strand, 41380519 - 41380842
Alignment:
| Q |
9 |
gacatcatcattgccaaggagtttaagagtaaaactggtaggtcttggcttcaagtataatactcctcaatgctccaatgggtgctagaatcattatact |
108 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41380519 |
gacatcatcattgtcaaggagtttaagagtaaaactggtaggacttggcttcaaggataatactcctcaatgctccaatgggtgctagaatcattataca |
41380618 |
T |
|
| Q |
109 |
aaccccaagaacaatacatatctgtaatatatggagcaaatattaaacatgtgctta----taacattattnnnnnnncttagagaaaaaatgcaataat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
41380619 |
taccccaagaacaatacatatctgtaatatatggagcaaatattaaacatgtgcttaattataacattattaaaaaaacttagagaaaaaatgcaataat |
41380718 |
T |
|
| Q |
205 |
taaagatacctacccaattaatccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttattagaat |
304 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41380719 |
taaagatacctacccaattaatccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttaatagaat |
41380818 |
T |
|
| Q |
305 |
gaaaagatgagtaagattatgatt |
328 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
41380819 |
gaaaagatgagtaagattatgatt |
41380842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 33 - 328
Target Start/End: Original strand, 7970105 - 7970411
Alignment:
| Q |
33 |
aagagtaaaactggtaggtcttggcttcaagtataatactcctcaatgctccaatgggtgctagaatcattatactaaccccaagaacaatacatatctg |
132 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| |
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| T |
7970105 |
aagagtaaaactggtaggtcttggcttcaagtataatactcctcaatgctccaatgggtgctaaaatcattatgcataccccaagaacaatacatatctg |
7970204 |
T |
|
| Q |
133 |
taatatatggagcaaatattaaacatgtgcttataacatta-------ttnnnnnnncttagag----aaaaaatgcaataattaaagatacctacccaa |
221 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| | |||| || ||||||| |||||||||||||||||||||||| |
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| T |
7970205 |
taatatatggagcaaatattaaacatgtgcttataacattaataaattattcaagaacttaaagaaaaaaaaaatacaataattaaagatacctacccaa |
7970304 |
T |
|
| Q |
222 |
ttaatccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttattagaatgaaaagatgagtaagat |
321 |
Q |
| |
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|||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || ||||| |
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| T |
7970305 |
ttaatccaccaagataagctgaatctttttggtttgtagagtttaagccacatgatacatggaagctgaaaatttaatagaatgaaaagttaagcaagat |
7970404 |
T |
|
| Q |
322 |
tatgatt |
328 |
Q |
| |
|
||||||| |
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|
| T |
7970405 |
tatgatt |
7970411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 33 - 328
Target Start/End: Complemental strand, 8043604 - 8043297
Alignment:
| Q |
33 |
aagagtaaaactggtaggtcttggcttcaagtataatactcctcaatgctccaatgggtgctagaatcattatactaaccccaagaacaatacatatctg |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |
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|
| T |
8043604 |
aagagtaaaactggtaggtcttggcttcaagtataatactcctcaatgctccaatgggtgctagaaccattatacataccccaagaacaacacatatctg |
8043505 |
T |
|
| Q |
133 |
taatatatggagcaaatattaaacatgtgcttat-aacatta-------ttnnnnnnncttagag----aaaaaatgcaataattaaagatacctaccca |
220 |
Q |
| |
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||| |||||||||||||||||||||||||||||| ||||||| | |||| || ||||||| |||||||||||||| |||||||| |
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| T |
8043504 |
taacatatggagcaaatattaaacatgtgcttataaacattaataaattattcaagaacttaaagaagaaaaaaatacaataattaaagatgcctaccca |
8043405 |
T |
|
| Q |
221 |
attaatccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttattagaatgaaaagatgagtaaga |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||| | || |||| |
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| T |
8043404 |
attaatccaccaagacaagctgaatctctttggtttgtagagtttaagccacacaatacatggaagctgaaaatttaatagaatgaaaagttaagcaaga |
8043305 |
T |
|
| Q |
321 |
ttatgatt |
328 |
Q |
| |
|
|||||||| |
|
|
| T |
8043304 |
ttatgatt |
8043297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 33 - 327
Target Start/End: Complemental strand, 8033668 - 8033362
Alignment:
| Q |
33 |
aagagtaaaactggtaggtcttggcttcaagtataatactcctcaatgctccaatgggtgctagaatcattatactaaccccaagaacaatacatatctg |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| | |||| |||||||| |||||| |
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|
| T |
8033668 |
aagagtaaaactggtaggtcttggcttcaagtataatactcctcaatgctccaatgggtgccaaaatcattatacataagccaataacaatacttatctg |
8033569 |
T |
|
| Q |
133 |
taatata-tggagcaaata--ttaaacatgtgcttataacattattnnnnnnnct----------tagagaaaaaatgcaataattaaagatacctaccc |
219 |
Q |
| |
|
||| | | | ||||||| | |||||||||||| ||||||| ||| | ||||||||| | |||||||||||||||||||||| |
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|
| T |
8033568 |
taacaaaatagagcaaagaaattaaacatgtgcatataacaatataaattatattataaagttgatagagaaaacaaacaataattaaagatacctaccc |
8033469 |
T |
|
| Q |
220 |
aattaatccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttattagaatgaaaagatgagtaag |
319 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||| ||||| || | ||||||||||||||||||||||| |||| || || |||||||||||||| || |
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| T |
8033468 |
aattagtccaccaagagaagctgaatctctttggtttgtaaaggattagccacatgatacatggaagctg-aaatgtaatataatgaaaagatgagcaaa |
8033370 |
T |
|
| Q |
320 |
attatgat |
327 |
Q |
| |
|
|||||||| |
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|
| T |
8033369 |
attatgat |
8033362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 295
Target Start/End: Original strand, 7976908 - 7976993
Alignment:
| Q |
210 |
atacctacccaattaatccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatt |
295 |
Q |
| |
|
|||| |||||||||| |||||| ||||||| |||| | |||| ||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
7976908 |
atacatacccaattagcccaccatgacaagccgaattttcttggtttgtagattgaaagccacatgatacatggaagctgaaaatt |
7976993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 14197141 - 14197211
Alignment:
| Q |
227 |
ccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaattta |
297 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| | ||||||||| || ||||| ||||||||||||| |
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|
| T |
14197141 |
ccaccaagacaagctgaatctccttggtttgtagattgcaagccacattatgcatggtagctgaaaattta |
14197211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 34410630 - 34410575
Alignment:
| Q |
230 |
ccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaa |
285 |
Q |
| |
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||||||||||| |||||||| || ||||| ||||||||||| ||||||||||||| |
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|
| T |
34410630 |
ccaagacaagccaaatctcttaggtttgtaaagtttaagccatatgatacatggaa |
34410575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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