View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_45 (Length: 344)
Name: NF2495_low_45
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_45 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 344
Target Start/End: Complemental strand, 928480 - 928144
Alignment:
| Q |
8 |
cagcagagaagatggcatcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaatgatcgtgctattggctgtgttctt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928480 |
cagcagagaagatggcatcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaatgatcgtgctattggctgtgttctt |
928381 |
T |
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| Q |
108 |
ttgttcacacctgaagataaaagcaggaaacaatctgcagaacttggctataatctaagctctaaatattggtgtaaagggattgtcacatgtgctgtga |
207 |
Q |
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| T |
928380 |
ttgttcacacctgaagataaaagcaggaaacaatctgcagaacttggctataatctaagctctaaatattggggtaaagggattgtcacatgtgctgtga |
928281 |
T |
|
| Q |
208 |
aacaaattgttaagattgcattcgatgaattttcgtacttggaaagacttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928280 |
aacaaattgttaagattgcattcgatgaattttcgtacttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaa |
928181 |
T |
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| Q |
308 |
agctggtttccaaaaggagggaactcttaggaagtat |
344 |
Q |
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| T |
928180 |
agctggtttccaaaaggagggaactcttaggaagtat |
928144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 924115 - 923787
Alignment:
| Q |
18 |
gatggcatcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaatgatcgtgctattggctgtgttcttttgttcac-- |
115 |
Q |
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| T |
924115 |
gatggcatcaacttcattgaaaatattgctaccaagtttctatggtgcaaagcaatatgcatcaatgatcgtgcaattgggtgtgtttctctatcctcga |
924016 |
T |
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| Q |
116 |
----acctgaagataaaagcaggaaacaatctgcagaacttggctataatctaagctctaaatattggtgtaaagggattgtcacatgtgctgtgaaaca |
211 |
Q |
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| T |
924015 |
gttcacctggtgataaatccaggaacaaatgtgcagaacttggctatgttctaggctctaaatattggggtaaaggggttgccacttgtgttgtgaaaca |
923916 |
T |
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| Q |
212 |
aattgttaagattgcattcgatgaattttcgtacttggaaagacttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagct |
311 |
Q |
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| T |
923915 |
agtggttaaggttgcattctgtgagttgtcttacttggaaaggcttgaagctcttgttgatgtggaaaatgctgggtctcaaagagttttggagaaagct |
923816 |
T |
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| Q |
312 |
ggtttccaaaaggagggaactcttaggaa |
340 |
Q |
| |
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||||||||||| |||||| ||||||||| |
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| T |
923815 |
ggtttccaaaaagagggagttcttaggaa |
923787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 344
Target Start/End: Complemental strand, 939405 - 939063
Alignment:
| Q |
8 |
cagcagagaagatggcatcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaatgatcgtgctattggctgtgttctt |
107 |
Q |
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||||| |||| | ||||||| |||||| |||| |||| || ||||||||| || ||||||||||||||| |||| |||||||||||||| ||||| | |
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| T |
939405 |
cagcaaagaacaaggcatcagcttcattgaaaatataccaaacaagtttctatggtgcaaagcaatatgccttaacaatcgtgctattggccgtgtttct |
939306 |
T |
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| Q |
108 |
ttgt--tca----cacctgaagataaaagcaggaaacaatctgcagaacttggctataatctaagctctaaatattggtgtaaagggattgtcacatgtg |
201 |
Q |
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|| ||| ||||| | |||||||||||||| || |||||||||||| |||| |||| ||||||||| ||| ||||||| || | ||| | || |
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| T |
939305 |
ctgaaatcaagatcacctcatgataaaagcaggaacaaaactgcagaacttgcctatgttctagcctctaaatactggggtaaaggaatagccacgtatg |
939206 |
T |
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| Q |
202 |
ctgtgaaacaaattgttaagattgcattcgatgaattttcgtacttggaaagacttgaagctcttgttgatgtggaaaatgttgggtctcaaagggtttt |
301 |
Q |
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|||||||||| | |||||| |||||||| ||| || || ||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
939205 |
ttgtgaaacaagtagttaaggttgcattcagtgagttgtcacacttggaaagagttgaagcttttgttgatgtggaaaatgttggatctcaaagggtttt |
939106 |
T |
|
| Q |
302 |
ggagaaagctggtttccaaaaggagggaactcttaggaagtat |
344 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||| |
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| T |
939105 |
ggagaaagctggtttccaaaaggagggaactcttgggaagtat |
939063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 167 - 344
Target Start/End: Complemental strand, 935451 - 935274
Alignment:
| Q |
167 |
ctctaaatattggtgtaaagggattgtcacatgtgctgtgaaacaaattgttaagattgcattcgatgaattttcgtacttggaaagacttgaagctctt |
266 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||||| |||||| |||||||| ||||||| | ||||||||| ||| |||||||| |
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| T |
935451 |
ctctaaatattggggtaaagggattgccacatgtgctgtgaaacaaatggttaaggttgcattcagtgaatttcaatccttggaaaggcttcaagctctt |
935352 |
T |
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| Q |
267 |
gttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaaggagggaactcttaggaagtat |
344 |
Q |
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|||||| |||| ||||||||||| |||| || | ||||||| |||||| ||||| ||||| ||||||||||||| |
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| T |
935351 |
gttgatatggataatgttgggtcgcaaaaagtacttgagaaagttggttttcaaaaagaggggcttcttaggaagtat |
935274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 41 - 325
Target Start/End: Complemental strand, 940404 - 940116
Alignment:
| Q |
41 |
tatagaaagcaagtttctttgttgcaaagcaatatgcattaatgatcgtgctattggctgtgttcttttgttcac------acctgaagataaaagcagg |
134 |
Q |
| |
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|||||||||||||| ||| ||||||||| |||||||| | ||||||||| |||| || || ||| ||||||| | |||| | ||| || ||||| |
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| T |
940404 |
tatagaaagcaagtatctatgttgcaaaacaatatgcctcaatgatcgtactatcgggtgagttattttgttttcgagattacct-acgatgaatgcagg |
940306 |
T |
|
| Q |
135 |
aaacaatctgcagaacttggctataatctaagctctaaatattgg-tgtaaagggattgtcacatgtgctgtgaaacaaattgttaagattgcattcgat |
233 |
Q |
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|| ||| || ||||||||||||| |||| ||| |||||||||| |||||||||||| ||||||||||||||||||| | |||||| |||||||| | |
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| T |
940305 |
aacaaatgtgtagaacttggctatgttctaggctataaatattgggtgtaaagggatttccacatgtgctgtgaaacaagtagttaaggttgcattcagt |
940206 |
T |
|
| Q |
234 |
gaattttcgtacttggaaagacttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaagga |
325 |
Q |
| |
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|| ||| | || ||||||| |||||| ||| | ||||||||||| |||||||||| || || ||||||||||||||||||||||||| |
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| T |
940205 |
gagtttccacacatggaaaggcttgaa--tctattagatgtggaaaacgttgggtctctgagagtgctggagaaagctggtttccaaaagga |
940116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 167 - 344
Target Start/End: Complemental strand, 925995 - 925812
Alignment:
| Q |
167 |
ctctaaatattggtgtaaagggattgtcacatgtgctgtgaaacaaattgttaagatt------gcattcgatgaattttcgtacttggaaagacttgaa |
260 |
Q |
| |
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||||||||| ||| |||||||||||| ||| ||||||||||||||||| |||| | || |||||| ||||||||| || |||||||| |||||| |
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| T |
925995 |
ctctaaatactggggtaaagggattgccacgtgtgctgtgaaacaaatggttatggttacatttgcattcagtgaattttcatatttggaaaggcttgaa |
925896 |
T |
|
| Q |
261 |
gctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaaggagggaactcttaggaagtat |
344 |
Q |
| |
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||||||||||||||||| ||||||||||| ||||| || | || |||| |||||| ||||| |||||| |||||| |||||| |
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| T |
925895 |
gctcttgttgatgtggataatgttgggtcacaaagagtacttgaaaaagttggttttcaaaaagagggagttcttagaaagtat |
925812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 328
Target Start/End: Complemental strand, 46648277 - 46648079
Alignment:
| Q |
130 |
gcaggaaacaatctgcagaacttggctataatctaagctctaaatattggtgtaaagggattgtcacatgtgctgtgaaacaaattgttaagattgcatt |
229 |
Q |
| |
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||||||| ||||||| |||||||||||| | | ||||| || |||||| | |||||||||| |||| || ||| |||||| | ||| | |||||| |
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| T |
46648277 |
gcaggaacaaatctgctgaacttggctatgctatgagctccaagtattggggcaaagggattgccacacttgttgtcaaacaagtggttgaagctgcatt |
46648178 |
T |
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| Q |
230 |
cgatgaattttcgtacttggaaagacttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaaggaggg |
328 |
Q |
| |
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| || ||| | ||||||||||| |||||||||| ||||||||||||||| | | ||||| || || |||||||| |||||||| |||| |||||| |
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| T |
46648177 |
taaggagtttccatacttggaaaggcttgaagctcaagttgatgtggaaaatatggcttctcagagagtattggagaaggctggttttcaaagggaggg |
46648079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 46656492 - 46656419
Alignment:
| Q |
243 |
tacttggaaagacttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggttt |
316 |
Q |
| |
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|||||||| || ||||| |||| ||||||||||||||||| | ||||||||||| |||||||| |||||||| |
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| T |
46656492 |
tacttggagaggcttgaggctcgagttgatgtggaaaatgtggcttctcaaagggtgttggagaaggctggttt |
46656419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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