View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_47 (Length: 341)
Name: NF2495_low_47
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 52698978 - 52698658
Alignment:
| Q |
18 |
gtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctgaagaaacctagtgaatgggc |
117 |
Q |
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| T |
52698978 |
gtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctgaagaaacctagtgaatgggc |
52698879 |
T |
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| Q |
118 |
ttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggtaatgcaaaaccccaactcca |
217 |
Q |
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| T |
52698878 |
ttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggtaatgcaaaaccccaactcca |
52698779 |
T |
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| Q |
218 |
ccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaattaaagaaagagaatttcatttgg |
317 |
Q |
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| T |
52698778 |
ccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaattaaagaaagagaatttcatttgg |
52698679 |
T |
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| Q |
318 |
acttctttttcatctcactcg |
338 |
Q |
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| T |
52698678 |
acttctttttcatctccctcg |
52698658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 21 - 338
Target Start/End: Complemental strand, 52721615 - 52721298
Alignment:
| Q |
21 |
tcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctgaagaaacctagtgaatgggcttc |
120 |
Q |
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| T |
52721615 |
tcaacctcatagagagtaggttcattttctacggaaactccttttcgatgtttcttgacggaggctacaataacctgaagaaacctagtaaaagggcttc |
52721516 |
T |
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| Q |
121 |
ccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggtaatgcaaaaccccaactccaccc |
220 |
Q |
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| T |
52721515 |
ccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtgggtattccaaaaccccaaccccaccc |
52721416 |
T |
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| Q |
221 |
tacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaattaaagaaagagaatttcatttggact |
320 |
Q |
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| T |
52721415 |
tagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccatgttgatagcaaagaaaaaccaattaaagaaagcgtatttctgttggact |
52721316 |
T |
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| Q |
321 |
tctttttcatctcactcg |
338 |
Q |
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||||||||||||| |||| |
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| T |
52721315 |
tctttttcatctccctcg |
52721298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 338
Target Start/End: Complemental strand, 52712794 - 52712477
Alignment:
| Q |
21 |
tcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctgaagaaacctagtgaatgggcttc |
120 |
Q |
| |
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|||||||| ||||||| || ||||||||||| |||||||||| | |||||||||| | || |||||||||||||||||||||||||| || ||||||| |
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| T |
52712794 |
tcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaagaaacctagtaaaagggcttc |
52712695 |
T |
|
| Q |
121 |
ccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggtaatgcaaaaccccaactccaccc |
220 |
Q |
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||||||| ||||| ||||| |||||| ||| ||| | || | | ||||||||||| || ||||||||||||||| | | |||||||||||| |||||| |
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| T |
52712694 |
ccattggcttttggaaacggtaataccgaacaccggcagctagaacaacgatagataaaaccgtagttattgtgggaattccaaaaccccaaccccaccc |
52712595 |
T |
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| Q |
221 |
tacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaattaaagaaagagaatttcatttggact |
320 |
Q |
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|| || | |||| ||||||||||| || ||||||||||| |||||||||||||| |||||| |||||||||||||||||| | ||||| |||||||| |
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| T |
52712594 |
tagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaattaaagaaagcgtatttcttttggact |
52712495 |
T |
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| Q |
321 |
tctttttcatctcactcg |
338 |
Q |
| |
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||||||||||||| |||| |
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| T |
52712494 |
tctttttcatctccctcg |
52712477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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