View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2495_low_48 (Length: 340)
Name: NF2495_low_48
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_48 |
 | |
|
| [»] scaffold0690 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 20)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 325
Target Start/End: Complemental strand, 9257736 - 9257424
Alignment:
| Q |
13 |
cagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatt |
112 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9257736 |
cagaaggagatgggaaggagttcataaatgaagtgggaactatgggtaaaatccaccatctcaatgctgtccgcttgcttggcttttgtgccgatggatt |
9257637 |
T |
|
| Q |
113 |
tcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggacaagttg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9257636 |
tcatcgtgctctagtctatgacttcttcccaaatggttcgttgcagaaattcatttctcctcctagcaacgaagatagtttccttggatgggacaagttg |
9257537 |
T |
|
| Q |
213 |
caacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9257536 |
caacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaagttgtgatcaaagaattcttcactttgacatcaatcctcataatgtcttga |
9257437 |
T |
|
| Q |
313 |
tcgatgacaattt |
325 |
Q |
| |
|
||||||||||||| |
|
|
| T |
9257436 |
tcgatgacaattt |
9257424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 9299979 - 9300286
Alignment:
| Q |
18 |
ggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatc |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
9299979 |
ggagatgggaaggagttcataaatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatc |
9300078 |
T |
|
| Q |
118 |
gtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggacaagttgcaaca |
217 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9300079 |
gtgctctagtctatgacttcttcccaagtggttcgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaaca |
9300178 |
T |
|
| Q |
218 |
aattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttgatcgat |
317 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9300179 |
aattgctctaggcatagccaatggaatagagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttgatcgat |
9300278 |
T |
|
| Q |
318 |
gacaattt |
325 |
Q |
| |
|
|||||||| |
|
|
| T |
9300279 |
gacaattt |
9300286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 15 - 325
Target Start/End: Complemental strand, 9466959 - 9466649
Alignment:
| Q |
15 |
gagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttc |
114 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||| |||||||| ||||| |||| |||||| |||||| |||| || || ||||||||| |
|
|
| T |
9466959 |
gagggagatggtaaggagttcataaatgaagtgggaactatgggaaaaatccatcatcttaatgttgtccgtttgcttggcttctgcgctgatggatttt |
9466860 |
T |
|
| Q |
115 |
atcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggacaagttgca |
214 |
Q |
| |
|
| || | | ||||||| || | || |||| || ||| ||||||||||| ||| ||| || | |||||||||| ||| ||||||||||||| | |||| |
|
|
| T |
9466859 |
accgcggtttagtctacgatctttttccaagtggttctttgcagaaatttctttctccaccaaacaacaaagatgcttttcttggatgggacacgctgca |
9466760 |
T |
|
| Q |
215 |
acaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttgatc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
9466759 |
acaaattgctctaggcatagccaatggaattgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataatgtcttgtta |
9466660 |
T |
|
| Q |
315 |
gatgacaattt |
325 |
Q |
| |
|
||||| ||||| |
|
|
| T |
9466659 |
gatgagaattt |
9466649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 9364284 - 9364589
Alignment:
| Q |
20 |
agatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatcgt |
119 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||| ||||| ||||||||||||| || || |||||| |||| || || ||||| |||| |||| |
|
|
| T |
9364284 |
agatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgtcgttcgtttgcttggcttctgcgcagatggttttcgtcgt |
9364383 |
T |
|
| Q |
120 |
gctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggacaagttgcaacaaa |
219 |
Q |
| |
|
||| ||||||||||||| || |||||| |||||||||||||||||||| ||| | | || ||||||| ||||||||||||||| ||||||||| ||| |
|
|
| T |
9364384 |
gctttagtctatgactttttttcaaatggttcgttgcagaaattcatttctcccgcgaacagcaaagatgatttccttggatgggataagttgcaaaaaa |
9364483 |
T |
|
| Q |
220 |
ttgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttgatcgatga |
319 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
9364484 |
ttgctctaggcatagcaaatggtattgagtatctccaccaaggttgtgatcaaagaattctacactttgacatcaatcctcataatgtcttgttagatga |
9364583 |
T |
|
| Q |
320 |
caattt |
325 |
Q |
| |
|
|||||| |
|
|
| T |
9364584 |
caattt |
9364589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 9337425 - 9337730
Alignment:
| Q |
20 |
agatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatcgt |
119 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||| ||||| ||||||||||||| || || ||||| |||| || || ||||| |||| |||| |
|
|
| T |
9337425 |
agatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgtcgttcgtttgctcggcttctgcgcagatggttttcgtcgt |
9337524 |
T |
|
| Q |
120 |
gctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggacaagttgcaacaaa |
219 |
Q |
| |
|
||| ||||||||||||| || |||||| |||||||||||||||||||| ||| | | || ||||||| ||||||||||||||| ||||||||| ||| |
|
|
| T |
9337525 |
gctttagtctatgactttttttcaaatggttcgttgcagaaattcatttctcccgcgaacagcaaagatgatttccttggatgggataagttgcaaaaaa |
9337624 |
T |
|
| Q |
220 |
ttgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttgatcgatga |
319 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
9337625 |
ttgctctaggcatagcaaatggtattgagtatctccaccaaggttgtgatcaaagaattctacactttgacatcaatcctcataatgtcttgttagatga |
9337724 |
T |
|
| Q |
320 |
caattt |
325 |
Q |
| |
|
|||||| |
|
|
| T |
9337725 |
caattt |
9337730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 13 - 325
Target Start/End: Complemental strand, 9242767 - 9242455
Alignment:
| Q |
13 |
cagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatt |
112 |
Q |
| |
|
|||||| |||||| ||||| |||||||||||||||||||| |||| || || || ||||| |||| || || |||||| ||| || || |||||||| |
|
|
| T |
9242767 |
cagaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaagattcatcatctaaatgtcgttcgtttgcttggctactgcgcggatggatt |
9242668 |
T |
|
| Q |
113 |
tcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggacaagttg |
212 |
Q |
| |
|
|| |||||| ||||||||||||| |||||||||| |||||||||||||||||||| | | || | |||||||||| ||||||||||||||| |||||| |
|
|
| T |
9242667 |
tcgccgtgctttagtctatgactttttcccaaatggttcgttgcagaaattcatttcttccccaaacaacaaagatgatttccttggatgggataagttg |
9242568 |
T |
|
| Q |
213 |
caacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttga |
312 |
Q |
| |
|
||| ||||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||| |||||| |
|
|
| T |
9242567 |
caaaaaattgctctaggtatagccaatggcattgagtatctccaccaaggttgtgatcaaagaattctacactttgacatcaatcctaataatgtcttgt |
9242468 |
T |
|
| Q |
313 |
tcgatgacaattt |
325 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
9242467 |
tagatgacaattt |
9242455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 12 - 325
Target Start/End: Original strand, 8926830 - 8927143
Alignment:
| Q |
12 |
acagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggat |
111 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||||||| |||| |||||||| ||| | |||| ||| || |||||| |||||||||||||||||| |
|
|
| T |
8926830 |
acagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggat |
8926929 |
T |
|
| Q |
112 |
ttcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggacaagtt |
211 |
Q |
| |
|
|| |||||||||| || |||||||| ||||| |||| ||||||||| || ||||||| | | || |||||| ||| ||||||||| |||||| || |
|
|
| T |
8926930 |
tttatcgtgctctggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacaacaaggatgttttccttggttgggacttatt |
8927029 |
T |
|
| Q |
212 |
gcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttg |
311 |
Q |
| |
|
||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |||||||| || || |||||| |
|
|
| T |
8927030 |
gcaacaaattgctctaggcattgccaatgggattgagtatcttcaccaaggttgtgatcatagaattcttcactttgatatcaatccccacaatgtcttg |
8927129 |
T |
|
| Q |
312 |
atcgatgacaattt |
325 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
8927130 |
ttagatgacaattt |
8927143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 15 - 325
Target Start/End: Original strand, 8939259 - 8939569
Alignment:
| Q |
15 |
gagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttc |
114 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| |||| ||||| || ||| | |||| |||||| |||||| |||||||||||||||||||| |
|
|
| T |
8939259 |
gagggagatgggagagagttcataaatgaagtgggaactatgggaaaaattcatcatgttaatgttgtccggttgcttggcttttgtgccgatggatttt |
8939358 |
T |
|
| Q |
115 |
atcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggacaagttgca |
214 |
Q |
| |
|
|||||||| | || |||||||| |||||||||| ||| ||||| || ||||||| | | ||| |||||| ||| ||||||||| |||||| ||||| |
|
|
| T |
8939359 |
atcgtgctttggtttatgactttttcccaaatggttcattgcaaaatttcatttcttcacctgacaacaaggatgttttccttggttgggacttattgca |
8939458 |
T |
|
| Q |
215 |
acaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttgatc |
314 |
Q |
| |
|
|||||||||||| ||||| |||||||| || ||||||||||||||||| |||||||| |||||||||||||| || |||||||| ||||| || || | |
|
|
| T |
8939459 |
acaaattgctcttggcattgccaatgggattgagtatcttcaccaaggctgtgatcatagaattcttcacttcgatatcaatccacataatgtattatta |
8939558 |
T |
|
| Q |
315 |
gatgacaattt |
325 |
Q |
| |
|
||||||||||| |
|
|
| T |
8939559 |
gatgacaattt |
8939569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 8962183 - 8962497
Alignment:
| Q |
12 |
acagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggat |
111 |
Q |
| |
|
||||| |||||||| | ||||||||||||||||| |||||| |||| |||||||| ||| | |||| |||||| || ||| ||||||| || ||||||| |
|
|
| T |
8962183 |
acagaaggagatgggagagagttcataaatgaagtaggaactatgggaaaaatccatcatgttaatgttgtccggttacttggcttttgcgctgatggat |
8962282 |
T |
|
| Q |
112 |
ttcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggacaagtt |
211 |
Q |
| |
|
|| |||||||| | || |||||||| ||||| |||| ||||||||| || ||||||| | | ||| |||||| ||| ||||||||| |||||| || |
|
|
| T |
8962283 |
tttatcgtgctttggtttatgactttttccctaatggttcgttgcaaaatttcatttcttcacctgacaacaaggatgttttccttggttgggacttatt |
8962382 |
T |
|
| Q |
212 |
gcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttg |
311 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||||| ||||| |||||||| || || ||||| |
|
|
| T |
8962383 |
gcaacagattgctctaggcattgccaatggaattgagtatcttcaccagggctgtgatcaaagaattcttcattttgatatcaatccgcacaatatcttg |
8962482 |
T |
|
| Q |
312 |
atcgatgacaatttt |
326 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
8962483 |
ttagatgacaatttt |
8962497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 9377603 - 9377749
Alignment:
| Q |
18 |
ggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatc |
117 |
Q |
| |
|
||||||||||| || ||||| |||||||| ||||| |||| ||||| || ||| |||||| ||| |||||||| | || ||||| |||||||| || | |
|
|
| T |
9377603 |
ggagatggaaacgatttcatcaatgaagtccgaactatgggaaaaattcatcatttcaatgttgttcgcttgctcggattctgtgctgatggattccacc |
9377702 |
T |
|
| Q |
118 |
gtgctctagtctatgacttcttcccaaatgattcgttgcagaaattc |
164 |
Q |
| |
|
||||||| |||||||| ||||| ||||||| |||||||| |||||| |
|
|
| T |
9377703 |
gtgctcttgtctatgatttctttccaaatgggtcgttgcaaaaattc |
9377749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 9236630 - 9236488
Alignment:
| Q |
18 |
ggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatc |
117 |
Q |
| |
|
||||||||||| || ||||| || ||||| |||||| |||| ||||| || ||| |||||| ||| ||||| || | |||||||| |||||||| || | |
|
|
| T |
9236630 |
ggagatggaaacgatttcatcaacgaagtcggaactatgggaaaaattcatcatgtcaatgttgttcgcttactcggattttgtgctgatggattccacc |
9236531 |
T |
|
| Q |
118 |
gtgctctagtctatgacttcttcccaaatgattcgttgcagaa |
160 |
Q |
| |
|
||||||| |||||||| ||||| || |||| || |||||||| |
|
|
| T |
9236530 |
gtgctcttgtctatgatttctttccgaatggctccttgcagaa |
9236488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 307
Target Start/End: Complemental strand, 9437811 - 9437702
Alignment:
| Q |
198 |
ggatgggacaagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatc |
297 |
Q |
| |
|
|||||||| ||| | |||||||||||||| ||||||||||| || || |||||||||||| |||||||||| |||||||||||| || || |||| |
|
|
| T |
9437811 |
ggatgggagaagctacaacaaattgctcttggcatagccaaaggtattgagtatcttcacatgagttgtgatcagcaaattcttcacttcgatattaatc |
9437712 |
T |
|
| Q |
298 |
ctcataacgt |
307 |
Q |
| |
|
| |||||||| |
|
|
| T |
9437711 |
cccataacgt |
9437702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 295
Target Start/End: Original strand, 10992814 - 10992917
Alignment:
| Q |
192 |
ttccttggatgggacaagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgaca |
291 |
Q |
| |
|
|||||||| ||| | |||||||| |||||||| |||| ||||| || ||| | ||||||||||| ||||||||||||||| | || ||||| ||||| | |
|
|
| T |
10992814 |
ttccttggttggaaaaagttgcatgaaattgctttaggtatagctaaaggagttgagtatcttcatcaaggttgtgatcaacgcatccttcattttgata |
10992913 |
T |
|
| Q |
292 |
tcaa |
295 |
Q |
| |
|
|||| |
|
|
| T |
10992914 |
tcaa |
10992917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 307
Target Start/End: Complemental strand, 9420728 - 9420619
Alignment:
| Q |
198 |
ggatgggacaagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatc |
297 |
Q |
| |
|
|||||||| ||| | |||||||||||||| ||||||||||| || || |||||||||||| |||||||||| |||||||||||| || || |||| |
|
|
| T |
9420728 |
ggatgggagaagctacaacaaattgctcttggcatagccaaaggtattgagtatcttcacatgagttgtgatcagcaaattcttcacttcgatattaatc |
9420629 |
T |
|
| Q |
298 |
ctcataacgt |
307 |
Q |
| |
|
| ||||||| |
|
|
| T |
9420628 |
cctataacgt |
9420619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 11026270 - 11026350
Alignment:
| Q |
192 |
ttccttggatgggacaagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaa |
272 |
Q |
| |
|
|||||||| ||| | |||||||| |||||||| |||| ||||| || ||||| || |||||||| ||||||||||||||| |
|
|
| T |
11026270 |
ttccttggctggaaaaagttgcacgaaattgctttaggaatagctaaaggaattgaatatcttcatcaaggttgtgatcaa |
11026350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 11040973 - 11041053
Alignment:
| Q |
192 |
ttccttggatgggacaagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaa |
272 |
Q |
| |
|
|||||||| ||| | |||||||| |||||||| |||| ||||| || ||||| || |||||||| ||||||||||||||| |
|
|
| T |
11040973 |
ttccttggctggaaaaagttgcacgaaattgctttaggaatagctaaaggaattgaatatcttcatcaaggttgtgatcaa |
11041053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 9495346 - 9495449
Alignment:
| Q |
201 |
tgggacaagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctc |
300 |
Q |
| |
|
||||| ||||| ||| ||||||| || || ||||| || ||||| ||||||||||| ||||| ||||| || || || ||||||||||| || || |||| |
|
|
| T |
9495346 |
tgggagaagttacaagaaattgcgcttggaatagcgaaaggaattgagtatcttcatcaaggatgtgaccagaggatacttcactttgatataaaacctc |
9495445 |
T |
|
| Q |
301 |
ataa |
304 |
Q |
| |
|
|||| |
|
|
| T |
9495446 |
ataa |
9495449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 8862029 - 8861971
Alignment:
| Q |
12 |
acagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccacca |
70 |
Q |
| |
|
||||||||||| || || |||||||| ||||||||||||| | |||| ||||||||||| |
|
|
| T |
8862029 |
acagagggagaagggaaagagttcatcaatgaagtgggaattatgggcaaaatccacca |
8861971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 8979429 - 8979311
Alignment:
| Q |
12 |
acagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggat |
111 |
Q |
| |
|
||||| ||||| || || |||||||| | |||||||||| | |||| ||||||||||| |||||| ||| || |||||| |||| ||||| || ||| |
|
|
| T |
8979429 |
acagaaggagacgggaaagagttcattagcgaagtgggaattatgggaaaaatccaccacatcaatgttgttcgattgcttggcttctgtgcagagggaa |
8979330 |
T |
|
| Q |
112 |
ttcatcgtgctctagtcta |
130 |
Q |
| |
|
||||||||| ||| ||||| |
|
|
| T |
8979329 |
ttcatcgtgttcttgtcta |
8979311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 268
Target Start/End: Original strand, 10930610 - 10930686
Alignment:
| Q |
192 |
ttccttggatgggacaagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtga |
268 |
Q |
| |
|
|||||||| ||| | |||||||| |||||||| |||| ||||| || ||| | ||||||||||| ||||||||||| |
|
|
| T |
10930610 |
ttccttggttggaaaaagttgcatgaaattgctttaggtatagctaaaggagttgagtatcttcatcaaggttgtga |
10930686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 11 - 325
Target Start/End: Original strand, 9171375 - 9171695
Alignment:
| Q |
11 |
cacagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatgga |
110 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||| |||| |||||| |||||| ||||||| ||||||||| |
|
|
| T |
9171375 |
cacagagggagatgggaaggagttcataaatgaagtgggaactatgggcaaaatccaccatctaaatgttgtccgtttgcttggcttttgcgccgatgga |
9171474 |
T |
|
| Q |
111 |
tttcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcattt----gtcctcctagcaa--caaagatagtttccttggatggg |
204 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| ||| |||||||||||||||| | | || | |||||||||||||||| |||||| |
|
|
| T |
9171475 |
tttcatcgtgctctagtctatgattttttcccaaatggttctttgcagaaattcatttcaatgacagaagagggagacaaagatagtttccttagatggg |
9171574 |
T |
|
| Q |
205 |
acaagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataa |
304 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9171575 |
acaagttgcaacaaattgctctaggaatagccaatggaattgagtatctgcaccaaggttgtgatcaaagaattcttcactttgacattaatcctcataa |
9171674 |
T |
|
| Q |
305 |
cgtcttgatcgatgacaattt |
325 |
Q |
| |
|
|||||| | ||||||||||| |
|
|
| T |
9171675 |
cgtcttactagatgacaattt |
9171695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 13 - 325
Target Start/End: Original strand, 1486 - 1798
Alignment:
| Q |
13 |
cagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatt |
112 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||||||||||||| || || |||||| ||||||| || ||||| || |
|
|
| T |
1486 |
cagagggagatgggaaggaattcataaatgaagtgggaaccatgggcaaaatccaccatctcaatgtcgttcgtttgcttggcttttgcgcagatggttt |
1585 |
T |
|
| Q |
113 |
tcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggacaagttg |
212 |
Q |
| |
|
|| ||||||| |||| |||||||| || ||||||| |||||| ||||||||||| | || | | |||||||||| ||||||||||||||| || ||| |
|
|
| T |
1586 |
tcgtcgtgctttagtttatgacttttttccaaatggttcgttacagaaattcatatctcacctgaacaacaaagatgatttccttggatgggataaattg |
1685 |
T |
|
| Q |
213 |
caacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttga |
312 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| |
|
|
| T |
1686 |
caacaaattgctctaggcatagctaatggcattgagtatctccaccaaggttgtgatcaaagaattttacactttgacatcaatcctcataatatcttgc |
1785 |
T |
|
| Q |
313 |
tcgatgacaattt |
325 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
1786 |
tagatgacaattt |
1798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 13 - 325
Target Start/End: Complemental strand, 15910620 - 15910308
Alignment:
| Q |
13 |
cagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatt |
112 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||||||||||||| || || ||||| ||||||| | ||||| || |
|
|
| T |
15910620 |
cagagggagatgggaaggaattcataaatgaagtgggaaccatgggcaaaatccaccatctcaatgtcgttcgtttgctcggcttttgctcagatggttt |
15910521 |
T |
|
| Q |
113 |
tcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggacaagttg |
212 |
Q |
| |
|
|||||||||| |||| |||||||| || ||||||| |||||| || |||||||| | || || | |||||||||| ||||||||||||||| || ||| |
|
|
| T |
15910520 |
tcatcgtgctttagtttatgacttttttccaaatggttcgttacaaaaattcatatctcacccgaacaacaaagatgatttccttggatgggataaattg |
15910421 |
T |
|
| Q |
213 |
caacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttga |
312 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| |
|
|
| T |
15910420 |
caacaaattgctctaggcatagctaatggcattgagtatctccaccaaggttgtgatcaaagaattttacactttgacatcaatcctcataatatcttgc |
15910321 |
T |
|
| Q |
313 |
tcgatgacaattt |
325 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
15910320 |
tagatgacaattt |
15910308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 27696131 - 27696225
Alignment:
| Q |
231 |
atagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttgatcgatgacaattt |
325 |
Q |
| |
|
||||| || ||||| ||||||||||| |||||||||||| || ||||||| || ||||| ||||| ||||||||||| ||| | || |||||||| |
|
|
| T |
27696131 |
atagcgaagggaattgagtatcttcatcaaggttgtgataaacgaattctccattttgatatcaaacctcataacgtattgctagacgacaattt |
27696225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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