View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_5 (Length: 645)
Name: NF2495_low_5
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_5 |
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| [»] scaffold0169 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 11 - 439
Target Start/End: Complemental strand, 8106950 - 8106509
Alignment:
| Q |
11 |
tattttacaacaaccaatcaaaatagatcatgacactcatttgttaatcaatgtataannnnnnngcctatttaattagatgtctatttctcattgttga |
110 |
Q |
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| T |
8106950 |
tattttacaacaaccaatcaaaatagatcatgacactcatttgttaatcaatgtataatttttttgcctatttaattagatgtctatttctcattgttga |
8106851 |
T |
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| Q |
111 |
tttgcacatcttccccaacctttattctaat--------------atttatggttatgtcaaatgcaaaataggtggttgaaaagagtattcttcatcta |
196 |
Q |
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| T |
8106850 |
tttgcacatcttccccaacctttattctaattgtattattctaatatttatggttatgtcaaatgcaaaataggtggttgaaaagagtattcttcatcta |
8106751 |
T |
|
| Q |
197 |
caaattttaatcaacaaatttagtcaaattgaatcaacgtgtaaaggaacaaaagtgtgcttgaatttcaattggattttgtttactgttgttgcttagt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8106750 |
caaattttaatcaacaaatttagtcaaattgaatcaacgtgtaaaggaacaaaagtgtgcttgaatttcaattggattttgtttactgttgttgcttagt |
8106651 |
T |
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| Q |
297 |
tgccagcaagtgtaactattcctggggagatatataccaaatggatatgaaaaagagagtttatatggtttaattgtcactgttctaactttgactcttc |
396 |
Q |
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| T |
8106650 |
tgccagcaagtgtaaccattcctggggagatagataccaaattgatatgaaaaagagag-ttatatggtttaattgtcactgttctaactttgactcttc |
8106552 |
T |
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| Q |
397 |
aaaatacatgaattgtaaactttgtaagtatcattgaagactc |
439 |
Q |
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| T |
8106551 |
aaaatacatgaattgtaaactttgtaagtatcattgaagactc |
8106509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 438 - 627
Target Start/End: Complemental strand, 8106478 - 8106286
Alignment:
| Q |
438 |
tcaattaattgaaagagaattacaaggcagaaaaaatgaatgaccttacaacagaattgggaacaagtaacagtaaaaacagaaaatgattgctaactaa |
537 |
Q |
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| T |
8106478 |
tcaattaattgaaagagaattacaaggcagaaaaattgaatgaccttacagcagaattgggaacaagtaacagtaaaaacagaaaatgattgctaactaa |
8106379 |
T |
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| Q |
538 |
tt---aatagataacaaaacatcaactaactaactaatttatgaactaattatagcccccctcaagttagagagtactaaatacagagacatg |
627 |
Q |
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| T |
8106378 |
ttaataatagataacaaaacatcaactaactaactaatttatgaactaattatagcccccctcaaattagagagtactaaatacagagacatg |
8106286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 8111596 - 8111546
Alignment:
| Q |
11 |
tattttacaacaaccaatcaaaatagatcatgacactcatttgttaatcaa |
61 |
Q |
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| T |
8111596 |
tattttacaacaaccaatcaaaatagatcatgacactcatttgttaatcaa |
8111546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 8117804 - 8117724
Alignment:
| Q |
197 |
caaattttaatcaacaaatttagtcaaattgaatcaacgtgtaaaggaacaaaagtgtgcttgaatttcaattggattttgtt |
279 |
Q |
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| T |
8117804 |
caaatgtttatcaacaaatttagtcaaattgc-tcaacgtgtaaag-aacaaaagtgtgcttgaatttcaattgaattttgtt |
8117724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 488 - 546
Target Start/End: Complemental strand, 8116610 - 8116552
Alignment:
| Q |
488 |
acagaattgggaacaagtaacagtaaaaacagaaaatgattgctaactaattaatagat |
546 |
Q |
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| T |
8116610 |
acagaattgggaacatgtaacagtaaaaacagaaaatgataactaacgaattaatagat |
8116552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 280 - 356
Target Start/End: Complemental strand, 8117700 - 8117624
Alignment:
| Q |
280 |
tactgttgttgcttagttgccagcaagtgtaactattcctggggagatatataccaaatggatatgaaaaagagagt |
356 |
Q |
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|||| ||| ||||||||||||||||| | |||| || ||||||||| |||||||||||||||| |||||||||||| |
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| T |
8117700 |
tactattgctgcttagttgccagcaactataaccttttctggggagacatataccaaatggataagaaaaagagagt |
8117624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 315 - 356
Target Start/End: Complemental strand, 8108696 - 8108655
Alignment:
| Q |
315 |
ttcctggggagatatataccaaatggatatgaaaaagagagt |
356 |
Q |
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| T |
8108696 |
ttcctggggagatgtataccaaatggataagaaaaagagagt |
8108655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 24265 - 24202
Alignment:
| Q |
132 |
ttattctaatatttatggttatgtcaaatgcaaaataggtggttgaaaagagtattcttcatct |
195 |
Q |
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|||||||||||||||| |||| ||||||| |||| |||||||||| || |||| ||||||||| |
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| T |
24265 |
ttattctaatatttatccttatatcaaatgtaaaacaggtggttgacaaaagtaatcttcatct |
24202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 772454 - 772391
Alignment:
| Q |
132 |
ttattctaatatttatggttatgtcaaatgcaaaataggtggttgaaaagagtattcttcatct |
195 |
Q |
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|||||| |||||||||| |||||||||||| |||| ||||||||| || |||| ||||||||| |
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| T |
772454 |
ttattcaaatatttatgcttatgtcaaatgtaaaactggtggttgacaaaagtaatcttcatct |
772391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 772562 - 772509
Alignment:
| Q |
90 |
atgtctatttctcattgttgatttgcacatcttccccaacctttattctaatat |
143 |
Q |
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| T |
772562 |
atgtttatttctcattgttgctttgcacatcttcctcaagctctattataatat |
772509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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