View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2495_low_53 (Length: 312)
Name: NF2495_low_53
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_53 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 12120746 - 12120465
Alignment:
| Q |
20 |
ccatcaacattacagtctccacattttagagtccagattgaagaaaaatgcatatggaaaatgttcagtaacatattcaacaccaagtcctaattcccag |
119 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12120746 |
ccatcaacattacagccaccacattttagagtccagattgaagaaaaatgtatatggaaaatgttcagtaacatattcaacaccaagtcctaattcccag |
12120647 |
T |
|
| Q |
120 |
cgatgtccctaaatttaaaattggttgctacgtcatttttctttgaaaatggaattgagtccaggaattaattaccattacacccaa-tttaatggggta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12120646 |
cgatgtccctaaatttaaaattggttgctacgtcatttttctttgaaaatggaattgagtccaggaattaattaccattacacccaattttaatggggta |
12120547 |
T |
|
| Q |
219 |
atcgattgggtgttagagagaatgtgagaaagagaatgttcatagcactcctctttagtcatttcatggggtaatcgatttt |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12120546 |
atcgtttgggtgttagagagaatgtgagaaagagaatgttcatagcactcctctttagtcatttcatggggtaatcgatttt |
12120465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 16895281 - 16895236
Alignment:
| Q |
228 |
gtgttagagagaatgtgagaaagagaatgttcatagcactcctctt |
273 |
Q |
| |
|
|||||||||||||||| ||||| ||| ||||||||||||| ||||| |
|
|
| T |
16895281 |
gtgttagagagaatgttagaaaaagagtgttcatagcacttctctt |
16895236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 24886077 - 24886034
Alignment:
| Q |
228 |
gtgttagagagaatgtgagaaagagaatgttcatagcactcctc |
271 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| ||||||||||||| |
|
|
| T |
24886077 |
gtgttagagagagtgttagaaagagaatgtccatagcactcctc |
24886034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University