View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_55 (Length: 307)
Name: NF2495_low_55
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 100 - 289
Target Start/End: Complemental strand, 8106478 - 8106286
Alignment:
| Q |
100 |
tcaattaattgaaagagaattacaaggcagaaaaaatgaatgaccttacaacagaattgggaacaagtaacagtaaaaacagaaaatgattgctaactaa |
199 |
Q |
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| T |
8106478 |
tcaattaattgaaagagaattacaaggcagaaaaattgaatgaccttacagcagaattgggaacaagtaacagtaaaaacagaaaatgattgctaactaa |
8106379 |
T |
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| Q |
200 |
tt---aatagataacaaaacatcaactaactaactaatttatgaactaattatagcccccctcaagttagagagtactaaatacagagacatg |
289 |
Q |
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| T |
8106378 |
ttaataatagataacaaaacatcaactaactaactaatttatgaactaattatagcccccctcaaattagagagtactaaatacagagacatg |
8106286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 8106591 - 8106509
Alignment:
| Q |
19 |
ttatatggtttaattgtcactgttctaactttgactcttcaaaatacatgaattgtaaactttgtaagtatcattgaagactc |
101 |
Q |
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| T |
8106591 |
ttatatggtttaattgtcactgttctaactttgactcttcaaaatacatgaattgtaaactttgtaagtatcattgaagactc |
8106509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 8116610 - 8116552
Alignment:
| Q |
150 |
acagaattgggaacaagtaacagtaaaaacagaaaatgattgctaactaattaatagat |
208 |
Q |
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| T |
8116610 |
acagaattgggaacatgtaacagtaaaaacagaaaatgataactaacgaattaatagat |
8116552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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