View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2495_low_58 (Length: 299)
Name: NF2495_low_58
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_58 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 40902095 - 40902193
Alignment:
| Q |
49 |
gtaacacattgcacaattgcgacatcccattaattttggtgttaaattaatactgattgattctgaaagaccatacatatcaatttacattcccttaat |
147 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40902095 |
gtaacacattgcacaattgcgacatcccactaattttggtgttaaattaatactgattgattctgaaagaccatacatatcaatttacattcccttaat |
40902193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 40902257 - 40902326
Alignment:
| Q |
211 |
gctcctcaataaaaacacattccatattcactctcctccttccacttttaaatttccctattatattttt |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40902257 |
gctcctcaataaaaacacattccatattcactctcctccttccacttttaaatttccctattatattttt |
40902326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University