View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_6 (Length: 634)
Name: NF2495_low_6
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 20 - 583
Target Start/End: Complemental strand, 12120746 - 12120183
Alignment:
| Q |
20 |
ccatcaacattacagtctccacattttagagtccagattgaagaaaaatgcatatggaaaatgttcagtaacatattcaacaccaagtcctaattcccag |
119 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12120746 |
ccatcaacattacagccaccacattttagagtccagattgaagaaaaatgtatatggaaaatgttcagtaacatattcaacaccaagtcctaattcccag |
12120647 |
T |
|
| Q |
120 |
cgatgtccctaaatttaaaattggttgctacgtcatttttctttgaaaatggaattgagtccaggaattaattaccattacacccaa-tttaatggggta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12120646 |
cgatgtccctaaatttaaaattggttgctacgtcatttttctttgaaaatggaattgagtccaggaattaattaccattacacccaattttaatggggta |
12120547 |
T |
|
| Q |
219 |
atcgattgggtgttagagagaatgtgagaaagagaatgttcatagcactcctctttagtcatttcatggggtaatcga-nnnnnnnnnnggcatgactag |
317 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12120546 |
atcgtttgggtgttagagagaatgtgagaaagagaatgttcatagcactcctctttagtcatttcatggggtaatcgatttttttttttggcatgactag |
12120447 |
T |
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| Q |
318 |
aaattgtcgaaaattatttaacacatttctgtcgnnnnnnnnnnntattattgaacacataaattgacaccatatgcaattttcaccgtattaaaagtan |
417 |
Q |
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| T |
12120446 |
aaattgtcgaaaattatttaacacatttctgtcg-aaaaaaaatatattattgaacacataaattgacaccatatgcaattttcaccgtattaaaagtat |
12120348 |
T |
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| Q |
418 |
nnnnnnnnnatcttcaaaaattgttataaaatcaatcagattagcttgggcacctaaatatcacgaggttacgcaaaaaagtaataaaatcaaaaccctg |
517 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
12120347 |
tttttttttatcttcaaaaattgttataaaatcaattagattagcttgggcacc-aagtatcacgaggttaggcaaaaaagtaataaaatcaacaccctg |
12120249 |
T |
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| Q |
518 |
aagctatagctgctgtcaaaaacgctgccgcctgccgggattccaccgtgagacattctcttttcc |
583 |
Q |
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| T |
12120248 |
aagctatagctgcttccaaaaacgctgctgcctgccgggattccaccgtgagacattctcttttcc |
12120183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 580 - 624
Target Start/End: Complemental strand, 12119624 - 12119580
Alignment:
| Q |
580 |
ttcctatattgcatgccctcttagatgcaccacgacacaggttct |
624 |
Q |
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| T |
12119624 |
ttcctatattgcatgccctcttagatgcaccacgacacgggttct |
12119580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 16895281 - 16895236
Alignment:
| Q |
228 |
gtgttagagagaatgtgagaaagagaatgttcatagcactcctctt |
273 |
Q |
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|||||||||||||||| ||||| ||| ||||||||||||| ||||| |
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| T |
16895281 |
gtgttagagagaatgttagaaaaagagtgttcatagcacttctctt |
16895236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 24886077 - 24886034
Alignment:
| Q |
228 |
gtgttagagagaatgtgagaaagagaatgttcatagcactcctc |
271 |
Q |
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|||||||||||| ||| ||||||||||||| ||||||||||||| |
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| T |
24886077 |
gtgttagagagagtgttagaaagagaatgtccatagcactcctc |
24886034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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