View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_62 (Length: 287)
Name: NF2495_low_62
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 43040706 - 43040471
Alignment:
| Q |
16 |
cactatgaagtgatacttaatagattacctgactacaaccatctattccagcagcttgaactttccttccttggactccaagtgagtctgcagagagaca |
115 |
Q |
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| T |
43040706 |
cactatgaagtgatacttaatagattacctgactacaaccatctattccagcagcttgaactttccttccttggactccatgtgagtctgcagagagaca |
43040607 |
T |
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| Q |
116 |
tacaatgagtctgcagaaagacatacaatcagaaaccttactcatccgacctttttgaatacgataattgnnnnnnnnttatacaccaggtaaaaaagaa |
215 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43040606 |
tacaat-------cagaaa----------------ccttactcatccgacctttttgaatacgataattgaaaaaaaattatacaccaggtaaaaaagaa |
43040530 |
T |
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| Q |
216 |
taaca-ataaaagacttaagcataatatataggcttaaatgcacttttcacctcctatg |
273 |
Q |
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||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43040529 |
taacacagaaaagacttaagcataatatataggcttaaatgcacttttcacttcctatg |
43040471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 43028177 - 43028072
Alignment:
| Q |
16 |
cactatgaagtgatacttaatagattacctgactacaaccatctattccagcagcttgaactttccttccttggactccaagtgagtctgcagagagaca |
115 |
Q |
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| T |
43028177 |
cactatgaagtgatacttaatagattacctgactacaaccatctattccagcagcttgaactttccttccttggactccaagtgagtctgcagagagaca |
43028078 |
T |
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| Q |
116 |
tacaat |
121 |
Q |
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|||||| |
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| T |
43028077 |
tacaat |
43028072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 43028095 - 43028034
Alignment:
| Q |
121 |
tgagtctgcagaaagacatacaatcagaaaccttactcatccgacctttttgaatacgataa |
182 |
Q |
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| T |
43028095 |
tgagtctgcagagagacatacaatcagaaaccttactcgtctgaccatttttaataagataa |
43028034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 273
Target Start/End: Complemental strand, 27453595 - 27453562
Alignment:
| Q |
240 |
tatataggcttaaatgcacttttcacctcctatg |
273 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
27453595 |
tatataggcttaaatgcacttttcaccccctatg |
27453562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 13828684 - 13828721
Alignment:
| Q |
236 |
ataatatataggcttaaatgcacttttcacctcctatg |
273 |
Q |
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||||||| ||||||||||||||||||||||| |||||| |
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| T |
13828684 |
ataatatttaggcttaaatgcacttttcaccccctatg |
13828721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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