View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_66 (Length: 280)
Name: NF2495_low_66
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_66 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 39499364 - 39499161
Alignment:
| Q |
21 |
tataccttgtgagtaagaaaaggataaaaataaacatagcatatgaagcaataccactttctaatgttgagtttattctctccttttcttcatgaattag |
120 |
Q |
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| T |
39499364 |
tataccttgtgagtaagaaaaggataaaaataaacatagcatatgaagcaataccactttctaatgttgagtttattctctccttttcttcatgaattag |
39499265 |
T |
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| Q |
121 |
cacaaccaactctttccaacaagaatcattaatttaaatacttaaactcaaccccaccattattcttcaatttctttcatccatacattatagtaaaaat |
220 |
Q |
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| T |
39499264 |
cacaaccaactctttccaacaagaatcattaatttaaatacttaaactcaaccccaccattattcttcaatttctttcatccatacattatagtaaaaat |
39499165 |
T |
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| Q |
221 |
aaaa |
224 |
Q |
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|||| |
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| T |
39499164 |
aaaa |
39499161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 39499145 - 39499109
Alignment:
| Q |
224 |
aagaagaagatgaagataggtaaggttggattagggg |
260 |
Q |
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||||| ||||||||||||||||||||||||||||||| |
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| T |
39499145 |
aagaataagatgaagataggtaaggttggattagggg |
39499109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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