View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_68 (Length: 278)
Name: NF2495_low_68
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 267
Target Start/End: Original strand, 29144538 - 29144792
Alignment:
| Q |
13 |
tctctctgtgctagctacctatagattcttttaagaagcactaaatttctttgtttttgttatccaaaagatgaaaagaatggatatcttctgtgcttca |
112 |
Q |
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| T |
29144538 |
tctctctgtgctagctacctatagattcttttaagaagcactaaatttctttgtttttgttatccaaaagatgaaaagaatggatatcttctgtgcttca |
29144637 |
T |
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| Q |
113 |
caagcctcaacagcaatatgtcttagcatggaacaagcttcatgctcctcttcaaataccattcaacttggaggcaaagtcattgatcgccacaacccta |
212 |
Q |
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| T |
29144638 |
caagcctcaacagcaatatgtcttagcatggaacaagcttcatgctcctcttcaaataccattcaacttggaggcaaagtcattgatcgccacaacccta |
29144737 |
T |
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| Q |
213 |
ttatcaatgattcaagaagaagcacttccaagactatcactgctctatgttcttc |
267 |
Q |
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| T |
29144738 |
ttatcaatgattcaagaagaagcacttccaagactatcactgctccatgttcttc |
29144792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 40453277 - 40453339
Alignment:
| Q |
75 |
tccaaaagatgaaaagaatggatatcttctgtgcttcacaagcctcaacagcaatatgtctta |
137 |
Q |
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| T |
40453277 |
tccaaaaaatgaaaggcattgaaatcttctgtgcatcacaagcctcaacagccatatgtctta |
40453339 |
T |
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