View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2495_low_69 (Length: 274)

Name: NF2495_low_69
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2495_low_69
NF2495_low_69
[»] chr1 (2 HSPs)
chr1 (9-263)||(34260750-34261004)
chr1 (9-228)||(34250866-34251084)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 34261004 - 34260750
Alignment:
Q  9 attttcacaagtagctgaaaacgacattcccccatccctagagaaagcttctgcaagcttcaagaaattgaggaaagaaaaagataacacataaactaca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34261004 attttcacaagtagctgaaaacgacattcccccatccctagagaaagcttctgcaagcttcaagaaattgagggaagaaaaagataacacataaactaca 34260905  T
Q  109 gctacttatatataatccttcaaacattggcacaatgattgtaataaataactgttttctagtgagcaaataaatttattttgaggtaaggtttccataa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34260904 gctacttatatataatccttcaaacattggcacaatgattgtaataaataactgttttctagtgagcaaataaatttattttgaggtaaggtttccataa 34260805  T
Q  209 aaattgtcagcttatggttggcccgaataacctattcttatagcttggtgagaat 263  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  34260804 aaattgtcagcttatggttgtgccgaataacctattcttatagcttggtgagaat 34260750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 34251084 - 34250866
Alignment:
Q  9 attttcacaagtagctgaaaacgacattcccccatccctagagaaagcttctgcaagcttcaagaaattgaggaaagaaaaagataacacataaactaca 108  Q
    ||||||||||||||| ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    |||||| |||||||||||| |||    
T  34251084 attttcacaagtagccgaaaacgacattcc---atccctagagaaagcttctgcaagcttcaagaaattgagggggaaaaaag-taacacataaacgaca 34250989  T
Q  109 gctacttatatataatccttcaaacattggcacaatgattgtaataaataact----gttttctagtgagcaaataaatttattttgaggtaaggtttcc 204  Q
     |||||||||||||||||| |||||| ||||| | |||||||||||||||| |    || |||||||  | ||||||||| ||||||||  |||||||||    
T  34250988 actacttatatataatcctccaaacactggcata-tgattgtaataaataaataaatgtcttctagtaggaaaataaattcattttgagaaaaggtttcc 34250890  T
Q  205 ataaaaattgtcagcttatggttg 228  Q
     || ||||||||||| ||||||||    
T  34250889 ttacaaattgtcagcatatggttg 34250866  T

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