View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_7 (Length: 620)
Name: NF2495_low_7
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 6 - 603
Target Start/End: Original strand, 33228737 - 33229336
Alignment:
| Q |
6 |
tctccaacatcatctctgcatcaactcagacttctgcaactaattctggacttaacgtaattaattaacctttccacttatacattttaataagttttgc |
105 |
Q |
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| T |
33228737 |
tctccaacatcatctctgcatcaactcagacttctggaactaattctggacttaacgtaattaattaacctttc-acttatacattttaataagttttgc |
33228835 |
T |
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| Q |
106 |
aacttactttatattatttatataatgtnnnnnnnnnnnn--tattttattgtgcaatttaattgttttcagactcagatttctttcaaaccagacttct |
203 |
Q |
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| T |
33228836 |
aacttactttatattatttatataatgtcacacacacacacatattttattgtgcaatttaattgttttcagactcagatttctttcaaaccagacttct |
33228935 |
T |
|
| Q |
204 |
ctgtcctgaagaggatttcttgtcaggttagttgtcaatgtcatttaagttgttattttatactttgcatttatgataataatnnnnnnnttctaccggt |
303 |
Q |
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| T |
33228936 |
ctgtcctgaagaggatttcttgtcaggttagttgtcaatgtcatttaagttgttattttatactttgcatttatgataataaaaaaaaaattctaccggt |
33229035 |
T |
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| Q |
304 |
taataaggataatttagtaaaatcaccatcttgtttcctccgtctatcatcttttattaatctgtatgaaatggtcaaa-tgcgacaattattgtgcgac |
402 |
Q |
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| T |
33229036 |
taataaggataatttagtaaaatcaccatcttgtctctttggtctatcatcttttattaatctgtatgaaatggtcaaaatgcgacaattattgtgcgac |
33229135 |
T |
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| Q |
403 |
agagagagtatgatatactgttgctaaatatgacagatgataacgacgcgtggcaccgcagaatgtgcacaccagacaacaatgtgggttctccatcacc |
502 |
Q |
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| T |
33229136 |
agagagagtatgatatactgttgctaaatatgacagatgataacgacgcgtggcacagcagaatgtgcacaccagacaacaatgtgggttctccatcacc |
33229235 |
T |
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| Q |
503 |
tcagaggcttctcttgggaagcaaaagcattgataactctagctgcattctctttggagtatggtgcaattatgcatcttcataggattcaatcatcaga |
602 |
Q |
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| T |
33229236 |
tcagaggcttctcttgggaagcaaaagcattgataactctagctgcattctctttggagtatggtgcaattatgcatcttcataggattcaatcatcaga |
33229335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 301 - 419
Target Start/End: Complemental strand, 6552241 - 6552123
Alignment:
| Q |
301 |
ggttaataaggataatttagtaaaatcaccatcttgtttcctccgtctatcatcttttattaatctgtatgaaatggtcaaatgcgacaattattgtgcg |
400 |
Q |
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| T |
6552241 |
ggttaataaggataatatagtacaatcaccattctctttctttcatttgtcatcttttcttaatctgtgtgaaatggtcaaatgtgacagttattgaggg |
6552142 |
T |
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| Q |
401 |
acagagagagtatgatata |
419 |
Q |
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||| || |||||| ||||| |
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| T |
6552141 |
acaaagggagtataatata |
6552123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 405
Target Start/End: Complemental strand, 41834894 - 41834790
Alignment:
| Q |
301 |
ggttaataaggataatttagtaaaatcaccatcttgtttcctccgtctatcatcttttattaatctgtatgaaatggtcaaatgcgacaattattgtgcg |
400 |
Q |
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|||||||||||||| |||||||||||||| | | |||||| | | |||||| |||| || |||||| ||||| ||||||||| |||| |||||||| | |
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| T |
41834894 |
ggttaataaggatactttagtaaaatcacagttctttttccttcatttatcatattttcttcatctgtgtgaaacggtcaaatgtgacagttattgtggg |
41834795 |
T |
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| Q |
401 |
acaga |
405 |
Q |
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||||| |
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| T |
41834794 |
acaga |
41834790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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