View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2495_low_70 (Length: 270)

Name: NF2495_low_70
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2495_low_70
NF2495_low_70
[»] chr7 (27 HSPs)
chr7 (22-180)||(47837376-47837539)
chr7 (178-264)||(24001029-24001115)
chr7 (180-264)||(42538448-42538532)
chr7 (181-256)||(41861674-41861751)
chr7 (182-264)||(31408650-31408732)
chr7 (180-264)||(5810941-5811025)
chr7 (181-264)||(5194248-5194331)
chr7 (184-259)||(26898424-26898499)
chr7 (181-264)||(24280613-24280696)
chr7 (181-264)||(35069721-35069804)
chr7 (181-264)||(43317443-43317526)
chr7 (183-264)||(4638216-4638297)
chr7 (183-264)||(44326180-44326261)
chr7 (180-264)||(31513286-31513370)
chr7 (181-264)||(5015395-5015478)
chr7 (181-264)||(9216302-9216384)
chr7 (181-264)||(27535248-27535331)
chr7 (181-264)||(42972852-42972935)
chr7 (173-264)||(45326012-45326103)
chr7 (183-264)||(10573751-10573832)
chr7 (181-264)||(40236919-40237002)
chr7 (183-264)||(43343641-43343722)
chr7 (183-264)||(44416951-44417032)
chr7 (183-264)||(16180374-16180454)
chr7 (190-259)||(32029839-32029908)
chr7 (181-214)||(38160661-38160694)
chr7 (180-248)||(39998407-39998475)
[»] chr5 (13 HSPs)
chr5 (181-264)||(41334680-41334763)
chr5 (175-264)||(2614666-2614755)
chr5 (181-264)||(7617133-7617216)
chr5 (181-264)||(18033982-18034065)
chr5 (181-264)||(38470579-38470662)
chr5 (179-264)||(22512303-22512388)
chr5 (176-256)||(33855068-33855148)
chr5 (183-264)||(5256997-5257078)
chr5 (175-264)||(33801463-33801552)
chr5 (170-264)||(32473411-32473505)
chr5 (183-259)||(25915010-25915085)
chr5 (181-253)||(30622747-30622818)
chr5 (181-264)||(17208074-17208157)
[»] chr3 (25 HSPs)
chr3 (180-264)||(36150129-36150213)
chr3 (181-264)||(54246165-54246248)
chr3 (182-264)||(40480750-40480832)
chr3 (178-264)||(42100685-42100771)
chr3 (182-264)||(54237097-54237179)
chr3 (183-264)||(27748565-27748646)
chr3 (179-264)||(45126945-45127030)
chr3 (183-264)||(53581875-53581956)
chr3 (181-264)||(4190282-4190365)
chr3 (181-264)||(24688419-24688502)
chr3 (181-264)||(25413681-25413764)
chr3 (182-264)||(42394436-42394518)
chr3 (181-264)||(40808865-40808948)
chr3 (181-264)||(46941053-46941136)
chr3 (181-264)||(47191043-47191125)
chr3 (181-253)||(10457920-10457992)
chr3 (181-264)||(53273701-53273784)
chr3 (181-264)||(9434124-9434207)
chr3 (181-264)||(25996268-25996351)
chr3 (179-216)||(34791827-34791864)
chr3 (173-264)||(1078219-1078309)
chr3 (185-264)||(29558251-29558330)
chr3 (181-264)||(52627994-52628077)
chr3 (196-264)||(51249323-51249391)
chr3 (178-226)||(51757590-51757638)
[»] chr8 (26 HSPs)
chr8 (178-264)||(11582763-11582849)
chr8 (181-264)||(36743500-36743583)
chr8 (181-259)||(30660764-30660842)
chr8 (182-264)||(45397317-45397399)
chr8 (183-264)||(26125637-26125718)
chr8 (179-264)||(29705360-29705445)
chr8 (183-264)||(42699259-42699340)
chr8 (181-264)||(5754903-5754986)
chr8 (181-264)||(42197452-42197535)
chr8 (181-259)||(2165985-2166063)
chr8 (183-264)||(29800967-29801048)
chr8 (183-264)||(42295197-42295278)
chr8 (181-264)||(16603643-16603726)
chr8 (183-264)||(20148762-20148843)
chr8 (183-264)||(30912579-30912660)
chr8 (181-264)||(18066735-18066818)
chr8 (181-264)||(35181516-35181599)
chr8 (180-253)||(1375541-1375614)
chr8 (181-225)||(19386626-19386670)
chr8 (181-264)||(2546996-2547079)
chr8 (181-264)||(34304788-34304871)
chr8 (179-216)||(28977144-28977181)
chr8 (183-264)||(33630010-33630091)
chr8 (181-220)||(10678201-10678240)
chr8 (189-264)||(31384672-31384747)
chr8 (183-264)||(3743773-3743854)
[»] scaffold0003 (1 HSPs)
scaffold0003 (183-264)||(45736-45817)
[»] chr6 (18 HSPs)
chr6 (183-264)||(27441544-27441625)
chr6 (180-264)||(30014342-30014426)
chr6 (181-264)||(7292747-7292830)
chr6 (181-264)||(9698350-9698433)
chr6 (181-264)||(3213400-3213483)
chr6 (181-264)||(7273352-7273435)
chr6 (179-264)||(13743238-13743323)
chr6 (179-264)||(13748738-13748823)
chr6 (181-264)||(7367549-7367632)
chr6 (181-264)||(26670026-26670109)
chr6 (181-264)||(21293694-21293777)
chr6 (181-264)||(26466799-26466882)
chr6 (183-264)||(24204004-24204085)
chr6 (183-264)||(30735984-30736065)
chr6 (181-264)||(21279929-21280012)
chr6 (181-264)||(33242403-33242486)
chr6 (181-226)||(31109277-31109322)
chr6 (176-264)||(33253908-33253996)
[»] chr2 (26 HSPs)
chr2 (179-264)||(1750412-1750497)
chr2 (179-256)||(16096745-16096822)
chr2 (181-264)||(12302270-12302353)
chr2 (182-264)||(19047158-19047240)
chr2 (183-259)||(43490423-43490499)
chr2 (171-264)||(43335780-43335873)
chr2 (181-259)||(14285676-14285754)
chr2 (176-220)||(42849907-42849951)
chr2 (181-264)||(4764743-4764826)
chr2 (181-264)||(16803968-16804051)
chr2 (181-264)||(16843250-16843333)
chr2 (181-264)||(30838632-30838715)
chr2 (181-264)||(43114557-43114640)
chr2 (183-264)||(11825671-11825752)
chr2 (183-259)||(33229303-33229380)
chr2 (177-221)||(7070412-7070456)
chr2 (181-264)||(966851-966934)
chr2 (178-253)||(12415488-12415563)
chr2 (178-253)||(12427548-12427623)
chr2 (181-264)||(18491705-18491788)
chr2 (183-264)||(4299437-4299518)
chr2 (183-264)||(41281991-41282072)
chr2 (182-226)||(34817831-34817875)
chr2 (223-259)||(39149314-39149350)
chr2 (176-208)||(42849962-42849994)
chr2 (183-232)||(8896632-8896681)
[»] scaffold0187 (2 HSPs)
scaffold0187 (181-264)||(14205-14288)
scaffold0187 (181-264)||(24533-24616)
[»] scaffold0157 (1 HSPs)
scaffold0157 (180-259)||(23443-23522)
[»] chr4 (32 HSPs)
chr4 (181-264)||(1771283-1771366)
chr4 (180-259)||(12496955-12497034)
chr4 (181-264)||(55966363-55966446)
chr4 (177-259)||(27316735-27316817)
chr4 (181-264)||(711960-712043)
chr4 (181-264)||(25051693-25051776)
chr4 (181-259)||(21687006-21687084)
chr4 (184-264)||(23204795-23204875)
chr4 (181-264)||(27864564-27864647)
chr4 (181-264)||(28982839-28982922)
chr4 (178-264)||(17619169-17619255)
chr4 (176-259)||(27550304-27550387)
chr4 (181-264)||(48463467-48463550)
chr4 (182-264)||(41878407-41878489)
chr4 (183-264)||(27893859-27893940)
chr4 (183-264)||(43735744-43735825)
chr4 (180-264)||(55272393-55272477)
chr4 (181-264)||(23035980-23036063)
chr4 (181-264)||(33703141-33703224)
chr4 (177-264)||(35017729-35017815)
chr4 (183-253)||(3756274-3756344)
chr4 (181-226)||(28988473-28988518)
chr4 (183-264)||(43514703-43514784)
chr4 (181-264)||(32728357-32728440)
chr4 (181-259)||(960892-960970)
chr4 (178-220)||(36004165-36004207)
chr4 (183-264)||(43949818-43949900)
chr4 (183-264)||(35037007-35037088)
chr4 (183-264)||(39631102-39631184)
chr4 (181-215)||(46827772-46827806)
chr4 (183-264)||(31680904-31680985)
chr4 (183-264)||(41327560-41327641)
[»] chr1 (22 HSPs)
chr1 (181-264)||(5489776-5489859)
chr1 (180-264)||(43571103-43571187)
chr1 (181-264)||(37814778-37814861)
chr1 (179-264)||(38335916-38336001)
chr1 (179-264)||(48119626-48119711)
chr1 (180-264)||(35003293-35003377)
chr1 (183-264)||(2497579-2497660)
chr1 (183-264)||(7447828-7447908)
chr1 (181-264)||(38113212-38113295)
chr1 (181-264)||(44112677-44112760)
chr1 (173-264)||(45639749-45639840)
chr1 (181-264)||(46168383-46168466)
chr1 (181-264)||(48498979-48499062)
chr1 (180-259)||(50448282-50448361)
chr1 (181-253)||(23989551-23989624)
chr1 (181-257)||(24769523-24769599)
chr1 (183-264)||(4401329-4401411)
chr1 (181-226)||(14427347-14427392)
chr1 (181-217)||(41065153-41065189)
chr1 (181-259)||(750327-750405)
chr1 (179-220)||(4888053-4888094)
chr1 (178-215)||(35000179-35000216)
[»] scaffold0038 (1 HSPs)
scaffold0038 (182-264)||(112656-112738)
[»] scaffold0385 (1 HSPs)
scaffold0385 (181-264)||(11251-11334)
[»] scaffold0119 (1 HSPs)
scaffold0119 (181-264)||(685-768)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 22 - 180
Target Start/End: Original strand, 47837376 - 47837539
Alignment:
Q  22 tcgggttaggtatatatcagttgaatgatattgtgaaatacaccgcaatacaaaattgcctacatagatagatagatagatcaccccctattctatgcta 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  47837376 tcgggttaggtatatatcagttgaatgatattgtgaaatacaccgcaatacaaaattggctagatagatagatagatagatcaccccctattctatgcta 47837475  T
Q  122 tagctgc-----ctgtacctggctacaaatggacatgtctaaagtaatttgatgtatattatat 180  Q
    |||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47837476 tagctgcctgtactgtacctggctacaaatggacatgtctaaagtaatttgatgtatattatat 47837539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 24001115 - 24001029
Alignment:
Q  178 tatggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||  ||||||||||||||||||| ||||    
T  24001115 tatggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 24001029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 42538532 - 42538448
Alignment:
Q  180 tggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||  ||||||||||||||||||| ||||    
T  42538532 tggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 42538448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 41861674 - 41861751
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtat--taaagatattttggtaagtt 256  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||  || |||||||||||||||||    
T  41861674 ggaaaatgttacatgaacaccctttattcatacacccaattatacaccctatgtattatagagatattttggtaagtt 41861751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 31408732 - 31408650
Alignment:
Q  182 gaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||| |||||||| | ||| ||||||| ||| ||||| ||||||||||||| ||||||||||    
T  31408732 gaaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaaattcatttcac 31408650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 5811025 - 5810941
Alignment:
Q  180 tggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||| ||||| |||||  ||||||||| ||||||||| ||||    
T  5811025 tggaaaatgttacatgaccaccctttattcctacaccccattgtacaccctatatattagggatattttgataagttcatctcac 5810941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 5194331 - 5194248
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||| |||||||||||||| |||| |||| ||||||| |||| ||||||||| ||| ||||| ||||    
T  5194331 ggaaaatgttacatgaacaccatttattcatacacctcattgtacaccctatgttttaaggatattttgataaattcatctcac 5194248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 26898499 - 26898424
Alignment:
Q  184 aaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcat 259  Q
    |||||||||||||||||| ||||||||||||||| ||| ||||| | ||||||||  |||||||||||||||||||    
T  26898499 aaatgttacatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggtaagttcat 26898424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 24280696 - 24280613
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||| |||||||||||||||||||||||| ||| ||||||| ||| | || | |||||||||||| ||||| ||||    
T  24280696 ggaaaatgttacgtgaacaccctttattcatacaccctattctacatcccatgcactagaaatattttggtaaattcatctcac 24280613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 35069721 - 35069804
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||| |||||||| |||||| |||| |||| |  ||||||||  ||||||||||||||||||| ||||    
T  35069721 ggaaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcac 35069804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 43317443 - 43317526
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||| |||||||||||||| |||| |||||||||||  |||  ||||||||| ||| ||||| ||||    
T  43317443 ggaaaatgttacatgaacaccatttattcatacacctcattgtacatcctatgctttagggatattttgataaattcatctcac 43317526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 4638297 - 4638216
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||| ||||||||||||| | ||| |||| || || |||||  ||||||||||||||||||| ||||    
T  4638297 aaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctcac 4638216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 44326180 - 44326261
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||| ||||||||||||||||||| |||||| |||| |  || |||||  ||||||||||||||||||| ||||    
T  44326180 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcac 44326261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 264
Target Start/End: Original strand, 31513286 - 31513370
Alignment:
Q  180 tggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||| ||||| |||||||||| ||| || | || ||| ||||| ||||||||||||| ||||| ||||    
T  31513286 tggaaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaaattcatctcac 31513370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 5015395 - 5015478
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||| |||||||  ||||| ||||| |||| |  ||||||||  ||||||||||||||||||| ||||    
T  5015395 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcac 5015478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 9216302 - 9216384
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||| || | || ||| |||| || ||| |||| |||||||||||||||||||| ||||    
T  9216302 ggaaaatgttacatgaacaccctttattcctatatcctattgtaca-cccatgcattagagatattttggtaagttcatctcac 9216384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 27535331 - 27535248
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||| |||||||| | ||| ||||  | |||| ||||||| |||||||||| ||||| ||||    
T  27535331 ggaaaatgttacatgaacaccctttaatcatacactctattgtacactccatgtgttaaagacattttggtaatttcatctcac 27535248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 42972852 - 42972935
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||| |||||| ||||||||| ||||| ||||| |||| |  ||||||||  ||||||||||||||||||| ||||    
T  42972852 ggaaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaagttcatctcac 42972935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 45326012 - 45326103
Alignment:
Q  173 tattatatggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||| ||||||| |||||||| |||||| |||||||||||| | |||| |||| || || |||||  ||||||||||||||||||| ||||    
T  45326012 tattaaatggaaagtgttacataaacaccttttattcatacatcacattgtacaccccatatattagggatattttggtaagttcatctcac 45326103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 10573751 - 10573832
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||| ||||||||||||||||||| || ||| |||| || ||||||||   |||||||||||| ||||| ||||    
T  10573751 aaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaaattcatctcac 10573832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 40236919 - 40237002
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||| ||||||| || ||| |||| || ||| ||||  || |||||||||| ||||| ||||    
T  40236919 ggaaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaatttcatctcac 40237002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 43343722 - 43343641
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||| | ||||||  ||||||| ||| |||| || ||||||||  ||||||||| ||||||||| ||||    
T  43343722 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcac 43343641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 44417032 - 44416951
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||| | ||||||  ||||||| ||| |||| || ||||||||  ||||||||| ||||||||| ||||    
T  44417032 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcac 44416951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 16180454 - 16180374
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||| |||||| ||||||| |||| |||||| |||| || | |||||| | |||||||||||| ||||| ||||    
T  16180454 aaaatgttacatcaacaccatttattcctaca-cccattgtacaccccacgtattataaatattttggtaaattcatctcac 16180374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 32029908 - 32029839
Alignment:
Q  190 tacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcat 259  Q
    ||||| |||||  ||||||| ||||||||||| |||| || ||||||||  ||||||||||||| |||||    
T  32029908 tacataaacactttttattcctacaccccattgtacaccccatgtattagggatattttggtaaattcat 32029839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 38160694 - 38160661
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcataca 214  Q
    ||||||||||||||||||||||||||||| ||||    
T  38160694 ggaaaatgttacatgaacaccctttattcctaca 38160661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 39998407 - 39998475
Alignment:
Q  180 tggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatatttt 248  Q
    |||||||||||||||||||||  |||| ||||||| || ||| |||| || ||||||||  ||||||||    
T  39998407 tggaaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattagggatatttt 39998475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 41334763 - 41334680
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||  ||||||||||||||||||| ||||    
T  41334763 ggaaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcac 41334680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 175 - 264
Target Start/End: Complemental strand, 2614755 - 2614666
Alignment:
Q  175 ttatatggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||  ||||||||||||||||||| ||||    
T  2614755 ttatatggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 2614666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 7617133 - 7617216
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||  ||||||||||||||||||| ||||    
T  7617133 ggaaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctcac 7617216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 18033982 - 18034065
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||| ||||| ||||| |||| |||||||||||  |||||||| |||||||||| ||||    
T  18033982 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctcac 18034065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 38470579 - 38470662
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||| |||||||||||||||||||  ||||| |||| || ||||||||| ||||||||||||| ||||||||||    
T  38470579 ggaaaatgttacataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggtaaattcatttcac 38470662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 22512303 - 22512388
Alignment:
Q  179 atggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| ||||  | ||||||||  ||||||||||||||||||| ||||    
T  22512303 atggaaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctcac 22512388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 256
Target Start/End: Complemental strand, 33855148 - 33855068
Alignment:
Q  176 tatatggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagtt 256  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||| |||| || ||||||||   | |||||||||||||    
T  33855148 tatacggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattaggaacattttggtaagtt 33855068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 5256997 - 5257078
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||| |||||| |||||||||||| |||||| |||| || ||||||||  ||||||||||||| ||||| ||||    
T  5256997 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcac 5257078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 33801463 - 33801552
Alignment:
Q  175 ttatatggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||| ||||||||||||||||||| ||||||||  ||||||||||| ||||  | ||||||||  |||||||| |||||||||| ||||    
T  33801463 ttataaggaaaatgttacatgaacatcctttatttctacaccccattgtacactccatgtattagggatattttagtaagttcatctcac 33801552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 264
Target Start/End: Complemental strand, 32473505 - 32473411
Alignment:
Q  170 gtatattatatggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||| || ||||||||||||||||||||||||||| |||||||||  ||| |||| |  ||| ||||  ||||||||||||| ||||| ||||    
T  32473505 gtatatcatttggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaatttcatctcac 32473411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 25915085 - 25915010
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcat 259  Q
    ||||||||||||||||||||||||||| |||||| |||| |||| || |||||||| | ||||||| ||| ||||||    
T  25915085 aaaatgttacatgaacaccctttattcctacacctcattgtacacccaatgtattaga-atatttttgtaggttcat 25915010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 253
Target Start/End: Complemental strand, 30622818 - 30622747
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaa 253  Q
    ||||||||||||||||||| |||||| |||||||||| ||| || | || ||| ||||| |||||||||||||    
T  30622818 ggaaaatgttacatgaacatcctttaatcatacaccctattgta-agcccatgcattaaggatattttggtaa 30622747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 17208074 - 17208157
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||| ||||||||||||| ||||||||   ||| |||| || ||| ||||| || |||||||||| ||||| ||||    
T  17208074 ggaaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaaattcatctcac 17208157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 180 - 264
Target Start/End: Original strand, 36150129 - 36150213
Alignment:
Q  180 tggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |  ||||||||||||||||||| ||||    
T  36150129 tggaaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaagttcatctcac 36150213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 54246248 - 54246165
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||||||| |||||||||| ||||    
T  54246248 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttcatctcac 54246165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 40480750 - 40480832
Alignment:
Q  182 gaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||  ||||||||||||||||||| ||||    
T  40480750 gaaaatgttacatgaacaccctttattcatatgccccattgtacatcctatgtattagggatattttggtaagttcatctcac 40480832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 42100685 - 42100771
Alignment:
Q  178 tatggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||||||||| |||||| |||| |||| || ||||||||  ||||||||||||||||||| ||||    
T  42100685 tatggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcac 42100771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 54237097 - 54237179
Alignment:
Q  182 gaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||  ||||||||||||||||||| ||||    
T  54237097 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 54237179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 27748565 - 27748646
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||| |||||||||||||| ||||||||| | |||||||||  ||||||||||||||||||| ||||    
T  27748565 aaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggtaagttcatctcac 27748646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 179 - 264
Target Start/End: Complemental strand, 45127030 - 45126945
Alignment:
Q  179 atggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||| ||||||||||||||||||| |||||| |||| || ||||||||  ||||||||||||||||||| ||||    
T  45127030 atggaaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcac 45126945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 53581956 - 53581875
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||  ||||||||| ||||||||| ||||    
T  53581956 aaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttcatctcac 53581875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 4190365 - 4190282
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||| |||||||||| ||| |||| | ||||||||| |||||||||||||| ||||| ||||    
T  4190365 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctcac 4190282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 24688502 - 24688419
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||  ||||| ||||| |||| |||||||||||  ||||||||||||||||||| ||||    
T  24688502 ggaaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttcatctcac 24688419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 25413681 - 25413764
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||| | |||||||||  |||||||| |||||||||| ||||    
T  25413681 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttcatctcac 25413764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 42394518 - 42394436
Alignment:
Q  182 gaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||||| ||||  ||||| |||| |||||||||||  ||||||||||||||||||| ||||    
T  42394518 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcac 42394436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 40808865 - 40808948
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||| |||||| ||||||| ||||||||||| |||| || ||||||||  ||||||||||||||||||| ||||    
T  40808865 ggaaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctcac 40808948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 46941053 - 46941136
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||| |||| | |||| |||| || ||||||||  ||||||||||||||||||| ||||    
T  46941053 ggaaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggtaagttcatctcac 46941136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 47191125 - 47191043
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||| |||||| |||| |||| || |||||||| |||||||||| ||||||||| ||||    
T  47191125 ggaaaatgttacatgaacaccctttattcctacacctcattgtaca-cccatgtattagagatattttgataagttcatctcac 47191043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 253
Target Start/End: Complemental strand, 10457992 - 10457920
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaa 253  Q
    ||||||||||||||||||||| |||| |||||||||| ||| |||| || ||| ||||| |||||||||||||    
T  10457992 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaa 10457920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 53273784 - 53273701
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||| ||||||| | ||||||| || ||| |||| ||||||| ||||||||  ||||||||||||||||||| ||||    
T  53273784 ggaaaatgttatatgaacatcatttattcctatacctcattgtacatcccatgtattagggatattttggtaagttcatctcac 53273701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 9434124 - 9434207
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||| |||||||| | ||| |||| || ||| ||||  || |||||||||| ||||| ||||    
T  9434124 ggaaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcac 9434207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 25996268 - 25996351
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||| ||||||| |  ||| |||| || || |||||| || |||||||||| ||||| ||||    
T  25996268 ggaaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaaattcatctcac 25996351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 34791827 - 34791864
Alignment:
Q  179 atggaaaatgttacatgaacaccctttattcatacacc 216  Q
    |||||||||||||||||||||||||||| |||||||||    
T  34791827 atggaaaatgttacatgaacaccctttaatcatacacc 34791864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 1078219 - 1078309
Alignment:
Q  173 tattatatggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||| |||| ||||||||||||||||||||||||||| | |||| |||| |||| |  ||||||| | |||||||| ||| |||||| ||||    
T  1078219 tattttatgaaaaatgttacatgaacaccctttattcctgcacctcattgtacacctaatgtatt-aggatatttttgtaggttcatctcac 1078309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 264
Target Start/End: Complemental strand, 29558330 - 29558251
Alignment:
Q  185 aatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||| |||||||||||||||||||||| | |||| |||| ||||| |||||   |||| ||||||| ||||| ||||    
T  29558330 aatgttatatgaacaccctttattcatacatctcattgtacaccctatatattaggaatatattggtaaattcatctcac 29558251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 52628077 - 52627994
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||| ||||||||||||| ||||||| || ||| |||| |  ||| |||||  |||||||||||| ||||| ||||    
T  52628077 ggaaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaaattcatctcac 52627994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 51249323 - 51249391
Alignment:
Q  196 aacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||  || ||||||||||| |  ||| ||||| ||||||||||||| ||||| ||||    
T  51249323 aacaccctttattcacccaacccattatacacctcatgcattaaggatattttggtaaattcatctcac 51249391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 51757590 - 51757638
Alignment:
Q  178 tatggaaaatgttacatgaacaccctttattcatacaccccattataca 226  Q
    |||||||||| |||||| ||||||||||| |||||||||| ||| ||||    
T  51757590 tatggaaaatattacataaacaccctttaatcatacaccctattgtaca 51757638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 11582763 - 11582849
Alignment:
Q  178 tatggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||  ||||||||||||||||||| ||||    
T  11582763 tatggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 11582849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 36743583 - 36743500
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||  ||||||||||||||||||| ||||    
T  36743583 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 36743500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 259
Target Start/End: Complemental strand, 30660842 - 30660764
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcat 259  Q
    ||||||||||||||||||||||||||||  |||| |||||| |||| |||||||||||  |||||||||||||||||||    
T  30660842 ggaaaatgttacatgaacaccctttatttctacatcccattgtacaccctatgtattagggatattttggtaagttcat 30660764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 45397317 - 45397399
Alignment:
Q  182 gaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||| |||||||||||||||| ||||||||||| |||| |||||||||||  |||||||| |||||||||| ||||    
T  45397317 gaaaatgttacgtgaacaccctttattcctacaccccattctacaccctatgtattagggatatttttgtaagttcatctcac 45397399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 26125637 - 26125718
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||| |||||||||||||||||||  ||||| |||| |||||||||||  ||||||||||||||||||| ||||    
T  26125637 aaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctcac 26125718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 29705360 - 29705445
Alignment:
Q  179 atggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||||  ||||||||||| |||| || ||||||||  ||||||||| ||||||||| ||||    
T  29705360 atggaaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataagttcatctcac 29705445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 42699259 - 42699340
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||| ||||||||||| |||| | |||||||||  |||||||| |||||||||| ||||    
T  42699259 aaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattatggatatttttgtaagttcatctcac 42699340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 5754903 - 5754986
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||| ||||||| |||| |||||| ||||||| || |||||  ||||||||||||||||||| ||||    
T  5754903 ggaaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggtaagttcatctcac 5754986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 42197535 - 42197452
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||| ||||||| |||||||||||  |||  ||||||||||  ||||||||||||||||||| ||||    
T  42197535 ggaaaatgttacatgaacaccatttattcctacaccccattgcacacactatgtattagggatattttggtaagttcatctcac 42197452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 259
Target Start/End: Complemental strand, 2166063 - 2165985
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcat 259  Q
    ||||||| ||||||||||||| ||||||| ||||||||||| || | || |||||||| ||||||||||||||||||||    
T  2166063 ggaaaatattacatgaacaccatttattcctacaccccattgtataccccatgtattagagatattttggtaagttcat 2165985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 29801048 - 29800967
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||| |||||| |||||||||||| |||||| |||| || ||||||||  ||||||||||||||||||| ||||    
T  29801048 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcac 29800967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 42295197 - 42295278
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||  | ||||||||  ||||||||||||||||||| ||||    
T  42295197 aaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctcac 42295278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 16603726 - 16603643
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||| |||||||||| |||||||||  |||||||| || ||| |||||||| |||||||||| ||||| ||||    
T  16603726 ggaaaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaaattcatctcac 16603643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 20148762 - 20148843
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||| ||||||||||||||||||| |||||| |||| |  || |||||  ||||||||||||||||||| ||||    
T  20148762 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcac 20148843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 30912660 - 30912579
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||    ||||||||  | ||||||||||||||||| ||||    
T  30912660 aaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggtaagttcatctcac 30912579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 18066818 - 18066735
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||| |||||||  | ||| ||||||| ||||||||  |||||||| |||| ||||| ||||    
T  18066818 ggaaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaatttcatctcac 18066735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 35181516 - 35181599
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||| |||||||||| ||| |||| || ||| ||||  || |||||||||| ||||| ||||    
T  35181516 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcac 35181599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 1375541 - 1375614
Alignment:
Q  180 tggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaa 253  Q
    |||||||| ||||||||||||| ||||||||||||||| ||| |||| || || |||||  |||||||||||||    
T  1375541 tggaaaattttacatgaacaccttttattcatacacccaattgtacaccccatatattagggatattttggtaa 1375614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 19386670 - 19386626
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatac 225  Q
    |||||||||||||||||||||||||| |||||||||| |||||||    
T  19386670 ggaaaatgttacatgaacaccctttaatcatacaccctattatac 19386626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 2546996 - 2547079
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||| |||||||  ||||| ||||| |||| |  ||||||||  |||||||| |||||||||| ||||    
T  2546996 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttcatctcac 2547079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 34304788 - 34304871
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||| |||||| |||||||||| ||| |||| || ||| ||||  || |||||||||| ||||| ||||    
T  34304788 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcac 34304871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 28977144 - 28977181
Alignment:
Q  179 atggaaaatgttacatgaacaccctttattcatacacc 216  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  28977144 atggaaaatgttacatgaacaccctttattcctacacc 28977181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 33630091 - 33630010
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||| |||||||||||| ||||||||| |||| |||| |||||| ||||  || ||||| |||| ||||| ||||    
T  33630091 aaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaatttcatctcac 33630010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 10678240 - 10678201
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccat 220  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  10678240 ggaaaatgttacatgaataccctttaatcatacaccccat 10678201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 264
Target Start/End: Original strand, 31384672 - 31384747
Alignment:
Q  189 ttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||| ||||  | ||| |||| || ||||||||   |||||||||||||||||| ||||    
T  31384672 ttacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaagttcatctcac 31384747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 3743773 - 3743854
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||| |||  ||||||||||||||| |  ||||||||||| || || ||||||  |||||||| ||||||||| ||||    
T  3743773 aaaatgttccatatacaccctttattcatccctcccattatacaccccatatattaagtatattttgataagttcatctcac 3743854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 45817 - 45736
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||||||||| ||||| ||||    
T  45817 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcac 45736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 27441544 - 27441625
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||||||||| ||||| ||||    
T  27441544 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcac 27441625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 180 - 264
Target Start/End: Original strand, 30014342 - 30014426
Alignment:
Q  180 tggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||   |||||||||||||||||| ||||    
T  30014342 tggaaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggtaagttcatctcac 30014426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 7292747 - 7292830
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||||| |||||||||||  ||||||||||||||||||| ||||    
T  7292747 ggaaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcac 7292830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 9698433 - 9698350
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||  ||||||||||||||||||| ||||    
T  9698433 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 9698350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 3213400 - 3213483
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||| ||||||||||||||||||| | |||| |||| || ||||||||| ||||||||||||| ||||||||||    
T  3213400 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcac 3213483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 7273435 - 7273352
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||| ||||||  ||| |||| || |||||||| |||||||||||||||||||| ||||    
T  7273435 ggaaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctcac 7273352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 264
Target Start/End: Complemental strand, 13743323 - 13743238
Alignment:
Q  179 atggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||| |||||||||||| || ||| |||| || ||||||||  ||||||||||||||||||| ||||    
T  13743323 atggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcac 13743238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 264
Target Start/End: Complemental strand, 13748823 - 13748738
Alignment:
Q  179 atggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||| |||||||||||| || ||| |||| || ||||||||  ||||||||||||||||||| ||||    
T  13748823 atggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcac 13748738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 7367549 - 7367632
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||| ||||||| | |||||||||||||| |||| ||||||| ||||||||  ||||||||||||||||||| ||||    
T  7367549 ggaaaatgttatatgaacatcatttattcatacacctcattgtacatcccatgtattagggatattttggtaagttcatctcac 7367632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 26670109 - 26670026
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||| |||||| |||| |||| |  ||||||||  ||||||||||||||||||| ||||    
T  26670109 ggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcac 26670026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 21293777 - 21293694
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||| |||||||||||||||||||   || | |||| || ||||||||| ||||||||||||| ||||||||||    
T  21293777 ggaaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtattaaggatattttggtaaattcatttcac 21293694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 26466799 - 26466882
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||| |||||||||||||| ||||||||||| ||||  | ||||||||  | ||||||||||||||||| ||||    
T  26466799 ggaaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaagttcatctcac 26466882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 24204085 - 24204004
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||| ||||||| ||||||| ||| ||||  | ||||||||  ||||||||||||||||||| ||||    
T  24204085 aaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctcac 24204004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 30735984 - 30736065
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||  ||||||| ||||||||||| |||| |  ||||||||  ||||||||||||||||||| ||||    
T  30735984 aaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaagttcatctcac 30736065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 21279929 - 21280012
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||  ||||  |||||  |||||| ||||||||  ||||||||||||| ||||| ||||    
T  21279929 ggaaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggtaaattcatctcac 21280012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 33242403 - 33242486
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||| |||| |||||||||  ||| |||| || ||||||||| || |||||||||| ||||| ||||    
T  33242403 ggaaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaaattcatctcac 33242486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 31109322 - 31109277
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattataca 226  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||    
T  31109322 ggaaaatgttacatgaacaccctttaatcatacatcccattataca 31109277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 33253908 - 33253996
Alignment:
Q  176 tatatggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||| |||| ||| |||||| ||| |||| || ||| ||||  || || ||||||| ||||| ||||    
T  33253908 tatatggaaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcac 33253996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 1750412 - 1750497
Alignment:
Q  179 atggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||  |||||||| |||||||||| ||||    
T  1750412 atggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcac 1750497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 16096745 - 16096822
Alignment:
Q  179 atggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagtt 256  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||  ||||||||||| ||||    
T  16096745 atggaaaatgttacatgaacaccctttattcctacaccccattatacaccccatgtattagggatattttggtgagtt 16096822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 12302353 - 12302270
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||  ||||||||||| |||| |||||||||||  |||||||| |||||||||| ||||    
T  12302353 ggaaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcac 12302270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 19047158 - 19047240
Alignment:
Q  182 gaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||||| ||||  ||||| |||| |||||||||||  ||||||||||||||||||| ||||    
T  19047158 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcac 19047240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 43490499 - 43490423
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcat 259  Q
    ||||||||||||||||||||||||||| |||| |||||| ||||  ||||||||||  |||||||||||||||||||    
T  43490499 aaaatgttacatgaacaccctttattcctacatcccattgtacactctatgtattagggatattttggtaagttcat 43490423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 43335873 - 43335780
Alignment:
Q  171 tatattatatggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||| |||| ||||||||||| ||||||| | ||||||| |||||| |||| ||||||| ||||||||  ||||||||||||||||||| ||||    
T  43335873 tataatataaggaaaatgttatatgaacatcatttattcctacacctcattgtacatcccatgtattagggatattttggtaagttcatctcac 43335780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 14285676 - 14285754
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcat 259  Q
    ||||||| |||||  ||||||||||| |||||||||| ||| |||| ||||| |||||||||||||||||||| |||||    
T  14285676 ggaaaatattacacaaacaccctttaatcatacaccctattgtacaccctatatattaaagatattttggtaaattcat 14285754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 42849951 - 42849907
Alignment:
Q  176 tatatggaaaatgttacatgaacaccctttattcatacaccccat 220  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  42849951 tatatggaaaatgttacatgaacaccctttattcctacaccccat 42849907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 4764826 - 4764743
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||| |||||| ||||||| ||||||| ||| |||| || |||||||| | |||||||||||| ||||| ||||    
T  4764826 ggaaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggtaaattcatctcac 4764743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 16803968 - 16804051
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||| |||||||||| ||| ||||||| ||| ||||  || |||||| ||| ||||| ||||    
T  16803968 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcac 16804051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 16843250 - 16843333
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||| |||||||||| ||| ||||||| ||| ||||  || |||||| ||| ||||| ||||    
T  16843250 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcac 16843333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 30838632 - 30838715
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||  |||| |  ||| |||| || ||||||||  ||||||||||||||||||| ||||    
T  30838632 ggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcac 30838715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 43114557 - 43114640
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||| |||||||||| ||| |||| || ||| ||||  || |||||||||| ||||| ||||    
T  43114557 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcac 43114640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 11825752 - 11825671
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||| |||||||||| ||| |||| || ||| ||||  || |||||||||| ||||| ||||    
T  11825752 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcac 11825671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 33229303 - 33229380
Alignment:
Q  183 aaaatgttacatgaacacccttt-attcatacaccccattatacatcctatgtattaaagatattttggtaagttcat 259  Q
    |||||| |||||||||||||||| |||| |||||| |||| |||| || ||||||||  |||||||||||||||||||    
T  33229303 aaaatgatacatgaacacccttttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcat 33229380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 7070412 - 7070456
Alignment:
Q  177 atatggaaaatgttacatgaacaccctttattcatacaccccatt 221  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||    
T  7070412 atatgaaaaatgttacatgaacaccctttattcatacatcccatt 7070456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 966934 - 966851
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||| |||||||||| ||| |||| || ||| |||||  |  ||||||||| ||||| ||||    
T  966934 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaagaacgttttggtaaattcatctcac 966851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 12415563 - 12415488
Alignment:
Q  178 tatggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaa 253  Q
    ||||||||||||||||||||||||||||| |||||||||  ||| |||| || ||| ||||  || ||||||||||    
T  12415563 tatggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaa 12415488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 12427623 - 12427548
Alignment:
Q  178 tatggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaa 253  Q
    ||||||||||||||||||||||||||||| |||||||||  ||| |||| || ||| ||||  || ||||||||||    
T  12427623 tatggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaa 12427548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 18491705 - 18491788
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||| |||||||||| ||| |||| |  ||| |||||  | |||||||||| ||||| ||||    
T  18491705 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaaattcatctcac 18491788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 4299518 - 4299437
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||| |||||||||||||| |||||||||| ||| ||||  | ||| ||||| || |||||||||| ||||| ||||    
T  4299518 aaaatgttatatgaacaccctttaatcatacaccctattgtacactccatgcattaatgacattttggtaaattcatctcac 4299437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 41282072 - 41281991
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||| |||||||||| ||| |||| || ||| ||||  || |||||| ||| ||||| ||||    
T  41282072 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttgataatttcatctcac 41281991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 34817875 - 34817831
Alignment:
Q  182 gaaaatgttacatgaacaccctttattcatacaccccattataca 226  Q
    ||||||||||||||||||||||||||||| ||||| |||| ||||    
T  34817875 gaaaatgttacatgaacaccctttattcacacacctcattgtaca 34817831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 39149350 - 39149314
Alignment:
Q  223 tacatcctatgtattaaagatattttggtaagttcat 259  Q
    |||||||||||||||| ||||||||||||||||||||    
T  39149350 tacatcctatgtattagagatattttggtaagttcat 39149314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 42849962 - 42849994
Alignment:
Q  176 tatatggaaaatgttacatgaacaccctttatt 208  Q
    |||||||||||||||||||||||||||||||||    
T  42849962 tatatggaaaatgttacatgaacaccctttatt 42849994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 8896681 - 8896632
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctat 232  Q
    |||||||||||||||||||||||||||| |||  ||||| |||| |||||    
T  8896681 aaaatgttacatgaacaccctttattcacacattccattgtacaccctat 8896632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 14288 - 14205
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||  |||||||| |||||||||| ||||    
T  14288 ggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcac 14205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 24616 - 24533
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||  |||||||| |||||||||| ||||    
T  24616 ggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcac 24533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 23522 - 23443
Alignment:
Q  180 tggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcat 259  Q
    |||||||||||| ||||||||||||||||| ||||| ||||| ||||||| |||||||| ||||||||||||||||||||    
T  23522 tggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcat 23443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 1771366 - 1771283
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||| || |||||||| |||||||||| ||||||||| ||||    
T  1771366 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttcatctcac 1771283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 12496955 - 12497034
Alignment:
Q  180 tggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcat 259  Q
    |||||||||||| ||||||||||||||||| ||||| ||||| ||||||| |||||||| ||||||||||||||||||||    
T  12496955 tggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcat 12497034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 55966446 - 55966363
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||| ||||||||||||||||||| |||||| ||||||| ||||||||  ||||||||||||||||||| ||||    
T  55966446 ggaaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttcatctcac 55966363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 259
Target Start/End: Complemental strand, 27316817 - 27316735
Alignment:
Q  177 atatggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcat 259  Q
    ||||||||||||||| | ||||||||||||||| |||||| ||||||||| || ||||||||| |||||||||||||||||||    
T  27316817 atatggaaaatgttaaacgaacaccctttattcctacacctcattatacaccccatgtattaaggatattttggtaagttcat 27316735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 711960 - 712043
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||| |||||||||| ||| |||| |||||| ||||| ||||||||||||| ||||| ||||    
T  711960 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaaattcatctcac 712043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 25051693 - 25051776
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||| |||||||||| |||||||| ||||||||||| |||| |||||||||||  ||||||||||||||||||| ||||    
T  25051693 ggaaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggtaagttcatctcac 25051776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 21687006 - 21687084
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcat 259  Q
    ||||||||||||||||||| ||||||||  |||||||||||||||||| ||||||||| | ||||||| ||||||||||    
T  21687006 ggaaaatgttacatgaacatcctttatttttacaccccattatacatcttatgtattagaaatattttagtaagttcat 21687084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 184 - 264
Target Start/End: Complemental strand, 23204875 - 23204795
Alignment:
Q  184 aaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||| |||||||| |||| |||||| ||||||||||||||||  |||||||| |||||||||| ||||    
T  23204875 aaatgttacatgaacactctttattcctacatcccattgtacatcctatgtattagggatatttttgtaagttcatgtcac 23204795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 27864564 - 27864647
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||| |||||| |||||||||||| |||||| |||| || ||||||||  ||||||||||||||||||| ||||    
T  27864564 ggaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcac 27864647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 28982922 - 28982839
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||  ||||||| ||| ||||||| || |||||  ||||||||||||||||||| ||||    
T  28982922 ggaaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaagttcatctcac 28982839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 17619255 - 17619169
Alignment:
Q  178 tatggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||| |||| |||||||||| ||| |||| || ||| ||||| ||||||||||||| ||||| ||||    
T  17619255 tatggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcac 17619169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 27550304 - 27550387
Alignment:
Q  176 tatatggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcat 259  Q
    |||| ||||||||||||||||||||||||||||  ||||| ||||| |||| |  ||||||||  |||||||||||||||||||    
T  27550304 tatagggaaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcat 27550387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 48463550 - 48463467
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||| |||||| ||||||||||||   |||| ||||||| ||||||||  ||||||||||||||||||| ||||    
T  48463550 ggaaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaagttcatctcac 48463467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 41878407 - 41878489
Alignment:
Q  182 gaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||| |||||  ||||  ||||||||| ||||||||| ||||    
T  41878407 gaaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataagttcatctcac 41878489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 27893940 - 27893859
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||| |||||| |||||||||||| |||||| |||| || ||||||||  ||||||||||||| ||||| ||||    
T  27893940 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcac 27893859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 43735744 - 43735825
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||| ||||||||||| ||||||||| |||| | |||||||||| | |||||||| |||||||||| ||||||||| ||||    
T  43735744 aaaatattacatgaacatcctttattcctacatctcattatacattccatgtattagagatattttgataagttcatctcac 43735825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 55272477 - 55272393
Alignment:
Q  180 tggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||| |||||| |||||||| | ||| |||| || ||| ||||| ||||||||||||| ||||| ||||    
T  55272477 tggaaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcac 55272393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 23035980 - 23036063
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||  ||||||||| ||||||| ||| |||| ||||| |||||  |||||||| |||||||||| ||||    
T  23035980 ggaaaatgttacatgaacctcctttattcctacaccctattgtacaccctatatattagggatatttttgtaagttcatctcac 23036063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 33703141 - 33703224
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||  |||| |  ||| |||| || ||||||||  ||||||||||||||||||| ||||    
T  33703141 ggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcac 33703224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 35017729 - 35017815
Alignment:
Q  177 atatggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||||||| || | | |||| |||| || ||||| ||  ||||||||||||||||||| ||||    
T  35017729 atatggaaaatgttacatgaacaccctttattcctatatctcattgtacaccccatgta-tagggatattttggtaagttcatctcac 35017815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 3756344 - 3756274
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaa 253  Q
    |||||||||||||||||||||||| |||||||||| ||| |||| || ||| ||||| |||||||| ||||    
T  3756344 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttagtaa 3756274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 28988473 - 28988518
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattataca 226  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||    
T  28988473 ggaaaatgttacatgaacaccctttattcatacacctcattgtaca 28988518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 43514784 - 43514703
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||    ||||||||  | ||||||||||||||||| ||||    
T  43514784 aaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttcatctcac 43514703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 32728357 - 32728440
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||| |||||| |||||||||| ||| |||| || ||| ||||| || ||||| |||| ||||| ||||    
T  32728357 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaaattcatctcac 32728440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 259
Target Start/End: Complemental strand, 960970 - 960892
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcat 259  Q
    |||||||||||||||||||||||||| |||||||| | ||| |||| |||||  ||||  || |||||||||| |||||    
T  960970 ggaaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaaattcat 960892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 36004207 - 36004165
Alignment:
Q  178 tatggaaaatgttacatgaacaccctttattcatacaccccat 220  Q
    |||||||||||||||||||| |||||||| |||||||||||||    
T  36004207 tatggaaaatgttacatgaataccctttaatcatacaccccat 36004165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 43949900 - 43949818
Alignment:
Q  183 aaaatgttacatgaacacccttt-attcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||| |||||||||||||||| |||| | |||| |||| |||| || ||||||||  ||||||||||||||||||| ||||    
T  43949900 aaaatgatacatgaacacccttttattcctgcacctcattgtacaccccatgtattagggatattttggtaagttcatctcac 43949818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 35037007 - 35037088
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||| |||||||||  ||||||| | ||| |||| || ||| ||||| ||||||||||||| ||||| ||||    
T  35037007 aaaatgttacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcac 35037088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 39631102 - 39631184
Alignment:
Q  183 aaaatgttacatgaacacccttt-attcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||| ||||||||| |||||| |||| |||||| |||| |||| |  ||||||||  ||||||||||||||||||| ||||    
T  39631102 aaaatgatacatgaacccccttttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcac 39631184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 46827806 - 46827772
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacac 215  Q
    |||||||||||||||||||||||||| ||||||||    
T  46827806 ggaaaatgttacatgaacaccctttaatcatacac 46827772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 31680904 - 31680985
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||| | |||||| ||||||||||||  ||||| |||| ||  | |||||  ||||||||||||||||||| ||||    
T  31680904 aaaatgttacgtaaacaccatttattcatacattccattgtacaccccgtatattagggatattttggtaagttcatctcac 31680985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 41327641 - 41327560
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||  |||||||||||||| |||||||||| |||| | |||| | ||  || |||||||||| ||||| ||||    
T  41327641 aaaatgttacatagacaccctttattcacacaccccattgtacaccttatgcactacggacattttggtaaattcatctcac 41327560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 5489776 - 5489859
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||  ||||||||||||||||||| ||||    
T  5489776 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 5489859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 43571187 - 43571103
Alignment:
Q  180 tggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||||||| |||||| |||| |||| || ||||||||  ||||||||||||||||||| ||||    
T  43571187 tggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcac 43571103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 37814778 - 37814861
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||| ||||||||||||||||||| | |||| |||| || ||||||||| ||||||||||||| ||||||||||    
T  37814778 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcac 37814861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 38335916 - 38336001
Alignment:
Q  179 atggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||||| |||||||||  ||| ||||||| ||| ||||| ||||||||||||| ||||| ||||    
T  38335916 atggaaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaaattcatctcac 38336001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 48119626 - 48119711
Alignment:
Q  179 atggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||||| |||||||||| ||| |||| || ||| ||||| ||||||||||||| ||||| ||||    
T  48119626 atggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcac 48119711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 264
Target Start/End: Original strand, 35003293 - 35003377
Alignment:
Q  180 tggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||| |||||||||| ||| |||| || ||  ||||| ||||||||||||| ||||| ||||    
T  35003293 tggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaaattcatctcac 35003377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 2497660 - 2497579
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||| |||||| ||||||||||||  ||||| |||| || || |||||| ||||||||||||||||||| ||||    
T  2497660 aaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctcac 2497579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 7447828 - 7447908
Alignment:
Q  183 aaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||| ||||||||| |||| |||||| |||| || |||||||| |||||||||| ||||||||| ||||    
T  7447828 aaaatgttacatgaacatcctttattcctacatcccattgtaca-cccatgtattacagatattttgataagttcatctcac 7447908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 38113295 - 38113212
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||| |||||||||||||| |||||||||| ||| |||| || ||| ||||| || |||||||||| ||||| ||||    
T  38113295 ggaaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaaattcatctcac 38113212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 44112677 - 44112760
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||| |||||||||| ||| |||| || ||| ||||  || |||||||||| ||||| ||||    
T  44112677 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcac 44112760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 45639840 - 45639749
Alignment:
Q  173 tattatatggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||| |||||||||||||||||||| ||||| ||||||| || ||| |||| || ||  ||||| ||||||||||||| ||||| ||||    
T  45639840 tattataaggaaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaaattcatctcac 45639749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 46168383 - 46168466
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||| ||||| | || ||| |||| || ||| ||||| ||||||||||||| ||||| ||||    
T  46168383 ggaaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaaattcatctcac 46168466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 48499062 - 48498979
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||| |||||||  ||||| ||||| |||| |  ||||||||  ||||||||||||||||||| ||||    
T  48499062 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcac 48498979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 50448361 - 50448282
Alignment:
Q  180 tggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcat 259  Q
    ||||||||||||||||||||| |||||||  ||||| ||||| |||| | |||||||||  |||||||| ||||||||||    
T  50448361 tggaaaatgttacatgaacactctttatttctacactccattgtacaccttatgtattagggatatttttgtaagttcat 50448282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 253
Target Start/End: Complemental strand, 23989624 - 23989551
Alignment:
Q  181 ggaaaatgttacatgaacaccc-tttattcatacaccccattatacatcctatgtattaaagatattttggtaa 253  Q
    |||||||||||||||||||||| ||||||||||||| | ||| || | |||||||||||  |||||||||||||    
T  23989624 ggaaaatgttacatgaacacccttttattcatacactcaattgtataccctatgtattagggatattttggtaa 23989551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 24769599 - 24769523
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttc 257  Q
    |||||||||| |||||||||| ||||||  ||||| ||||| |||| || ||||||||  |||||||||||||||||    
T  24769599 ggaaaatgtttcatgaacaccttttatttctacactccattgtacaccccatgtattagggatattttggtaagttc 24769523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 4401329 - 4401411
Alignment:
Q  183 aaaatgttacatgaacacccttt-attcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||| ||||||||||| |||| |||| |||||  |||| |||| || |||||||| |||||||||||||||||||| ||||    
T  4401329 aaaatgatacatgaacactcttttattcctacacttcattgtacaccccatgtattagagatattttggtaagttcatctcac 4401411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 14427347 - 14427392
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattataca 226  Q
    |||||||||||||||||||||||||| |||||||||| ||| ||||    
T  14427347 ggaaaatgttacatgaacaccctttaatcatacaccctattgtaca 14427392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 41065153 - 41065189
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccc 217  Q
    |||||||||||||||||||||||||| ||||||||||    
T  41065153 ggaaaatgttacatgaacaccctttaatcatacaccc 41065189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 259
Target Start/End: Complemental strand, 750405 - 750327
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcat 259  Q
    |||||||||||| |||||||||||  ||| ||||||||||| |||| || |||||| |  ||||||||| ||| |||||    
T  750405 ggaaaatgttacgtgaacacccttatttcctacaccccattgtacaccccatgtatcagggatattttgataaattcat 750327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 4888053 - 4888094
Alignment:
Q  179 atggaaaatgttacatgaacaccctttattcatacaccccat 220  Q
    |||||||||||||||||||| |||||||||| |||| |||||    
T  4888053 atggaaaatgttacatgaacgccctttattcctacatcccat 4888094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 35000216 - 35000179
Alignment:
Q  178 tatggaaaatgttacatgaacaccctttattcatacac 215  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  35000216 tatggaaaatgttacatgaacaccttttaatcatacac 35000179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 112656 - 112738
Alignment:
Q  182 gaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    |||||||||||||||||||||||||||| ||||  ||||| |||| |||||||||||  ||||||||||||||||||| ||||    
T  112656 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcac 112738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 11251 - 11334
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||| |||||||||| |||||||||||||||||||| |||| || || |||||  ||||||||||||||||||| ||||    
T  11251 ggaaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaagttcatctcac 11334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 685 - 768
Alignment:
Q  181 ggaaaatgttacatgaacaccctttattcatacaccccattatacatcctatgtattaaagatattttggtaagttcatttcac 264  Q
    ||||||||||||||||||||||||||||| |||||| |||| |||| |  ||||||||  ||||||||||||||||||| ||||    
T  685 ggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcac 768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University