View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_77 (Length: 260)
Name: NF2495_low_77
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_77 |
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| [»] scaffold0813 (1 HSPs) |
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Alignment Details
Target: scaffold0813 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0813
Description:
Target: scaffold0813; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 2653 - 2882
Alignment:
| Q |
17 |
atgaagtagtctaaacctctgtacaaggtaagaacatatatagtctgtatcgaaacatgtgttgaatgtaaagaaaccatagttattgttgaacggaagg |
116 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2653 |
atgaagtagtctaaacttctgtacaaggtaagaacatatatagtctgtatcgaaacatgtgttgaatataaagaaaccatagttattgttgaacggaagg |
2752 |
T |
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| Q |
117 |
gttttaacttttataggagcggaggtaattggtagtggtataaaaatagatattttgtctggttgagaggaaagaaacatagataatcttctctttgttt |
216 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2753 |
gttttaacttttataggagcggaggtaattgatagtggtataaaaatagatattttgtctggttgagaggaaagaaacatagataatcttctctttgttc |
2852 |
T |
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| Q |
217 |
tgttcagaagggaatgagagatattttaat |
246 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2853 |
tgttcagaagggaatgagagatattttaat |
2882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 6619333 - 6619104
Alignment:
| Q |
17 |
atgaagtagtctaaacctctgtacaaggtaagaacatatatagtctgtatcgaaacatgtgttgaatgtaaagaaaccatagttattgttgaacggaagg |
116 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6619333 |
atgaagtagtctaaacttctgtacaaggtaagaacatatatagtctgtatcgaaacatgtgttgaatataaagaaaccatagttattgttgaacggaagg |
6619234 |
T |
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| Q |
117 |
gttttaacttttataggagcggaggtaattggtagtggtataaaaatagatattttgtctggttgagaggaaagaaacatagataatcttctctttgttt |
216 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6619233 |
gttttaacttttataggagcggaggtaattgatagtggtataaaaatagatattttgtctggttgagaggaaagaaacatagataatcttctctttgttc |
6619134 |
T |
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| Q |
217 |
tgttcagaagggaatgagagatattttaat |
246 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
6619133 |
tgttcagaagggaatgagagatattttaat |
6619104 |
T |
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