View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_79 (Length: 259)
Name: NF2495_low_79
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_79 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 32264413 - 32264647
Alignment:
| Q |
10 |
agcacagacacatatataatgagtacacaatatcaaagatgttgcgacactgcggttggattgttctggcttatcaaatgtttctcggggctcaacacat |
109 |
Q |
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| T |
32264413 |
agcacagacgcatatataatgagtacacaatatcaaagatgttgcgacactacggttggattgttctggcttatcaaatgtttctcggggctcaacacat |
32264512 |
T |
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| Q |
110 |
tatagtgctccgtgcagtcatcagggcagggttttcatgcgcactagttgagcgcctcgtgcttaacattaaaattgtgttccgtgagctacacaaattt |
209 |
Q |
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| T |
32264513 |
tatagtgctccgtgcagtcatcagggcgaggttttcatgcgcactagttgagcgcctcgtgcttaacattaaaattgtgttccgtgagctacacaaattt |
32264612 |
T |
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| Q |
210 |
tcccttaaactaagaccaacattaagggggagagg |
244 |
Q |
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| T |
32264613 |
tcccttaaactaagaccaacattaagggggagagg |
32264647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 62 - 237
Target Start/End: Original strand, 32255402 - 32255577
Alignment:
| Q |
62 |
cggttggattgttctggcttatcaaatgtttctcggggctcaacacattatagtgctccgtgcagtcatcagggcagggttttcatgcgcactagttgag |
161 |
Q |
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| T |
32255402 |
cggttggattgttctggcttatcaaatgtcaccaggggctcaacacattgcaatgctacatgcggtcattagggcggggttttcatgggcactagttggg |
32255501 |
T |
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| Q |
162 |
cgcctcgtgcttaacattaaaattgtgttccgtgagctacacaaattttcccttaaactaagaccaacattaaggg |
237 |
Q |
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| T |
32255502 |
tgcctcacacttgacataaaaattctgttccgtgagcttcacaaactttcccctaaactaagaccaacaataaggg |
32255577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 32249544 - 32249601
Alignment:
| Q |
28 |
atgagtacacaatatcaaagatgttgcgacactgcggttggattgttctggcttatca |
85 |
Q |
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| T |
32249544 |
atgagtacacaatatcaaagatgttgcggtgctatgattggattgttctggcttatca |
32249601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 236
Target Start/End: Original strand, 23203167 - 23203314
Alignment:
| Q |
96 |
ggggctcaacacattatagtgctccgtgcagtcatca------gggcagggttttca-tgcgcactagttgagcgcctcgtgcttaacattaaaattgtg |
188 |
Q |
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| T |
23203167 |
ggggctcaacacattacagtgctccgtgcggtcattaatattagggcggagttttcaatgcgcactagtttagcgcttcgcgcttgacattaaaaacatg |
23203266 |
T |
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| Q |
189 |
ttccgtgagctacacaaattttcccttaaactaagaccaacattaagg |
236 |
Q |
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| T |
23203267 |
ttccgtgagcttcacaaactttcccctaaacatagaccagcattaagg |
23203314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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