View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_84 (Length: 250)
Name: NF2495_low_84
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_84 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 14001017 - 14001243
Alignment:
| Q |
10 |
aagaatattgatcaggttaataggatgtttaaggaggaggttgttaaactgcagagtggggagtatgagaagatgttttgttcatacttttttgtaataa |
109 |
Q |
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| T |
14001017 |
aagaatattgatcaggttgataggatgtttaaggaggaggttgttaaactgcagagtggggagtatgagaagatgtttt--------------gtaataa |
14001102 |
T |
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| Q |
110 |
gaatgatgctatatcattgctgtttgattccttaaaaatttcatcttgcatgttttcatcattgctagtgattgatttttgttacatttaaactatattg |
209 |
Q |
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| T |
14001103 |
gaatgatgctatatcattgctgtttgattccttaaaaatttcatcttgcatgttttcatcattgctagtgattgatttttgttacatttaaactatattg |
14001202 |
T |
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| Q |
210 |
tcaagtcgtgatatgtcatatgtcatgcatttctttcagaa |
250 |
Q |
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| T |
14001203 |
tcaagtcgtgatatgtcatatgttatgcatttctttcagaa |
14001243 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 1472135 - 1472209
Alignment:
| Q |
8 |
cgaagaatattgatcaggttaataggatgtttaaggaggaggttgttaaactgcagagtggggagtatgagaaga |
82 |
Q |
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| T |
1472135 |
cgaagaatattgatcaggttgttatgatgcttaagaaggaggttgttaagacgcagagcggggagcatgagaaga |
1472209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 184
Target Start/End: Original strand, 1473234 - 1473263
Alignment:
| Q |
155 |
ttgcatgttttcatcattgctagtgattga |
184 |
Q |
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| T |
1473234 |
ttgcatgttttcatcattgctagtgattga |
1473263 |
T |
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