View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_86 (Length: 250)
Name: NF2495_low_86
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_86 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 33824660 - 33824905
Alignment:
| Q |
8 |
agagatgaactacttaatgatgatgattcaccaaaatggccaaagagtttaagcaggtggaaagagcgattaggcctaaagagatcaagtgcatctaaga |
107 |
Q |
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| T |
33824660 |
agagatgaactacttaatgatgatgattcaccaaaatggccaaagagtttaagcaggtggaaagagcgattaggcctaaagagatcaagtgcatctaaga |
33824759 |
T |
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| Q |
108 |
aagacaaggagaaacaaaaaatgcagaaatctgctgctaaccaaacagtgcctagttttggacaaggagaaacaactgttaacaaagaaagtatggtaag |
207 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33824760 |
aagacaaggagaaacaaaaaatgcagaagtctgctgctaaccaaacagtgcctagttttggacaaggagaaacaactgttaacaaagaaagtatggtaag |
33824859 |
T |
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| Q |
208 |
atgttcatctatccctctc---atctcattctttttcattgcatgc |
250 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
33824860 |
atgttcatctatccctctcataatctaattctttttcattgcatgc |
33824905 |
T |
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