View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2495_low_88 (Length: 250)

Name: NF2495_low_88
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2495_low_88
NF2495_low_88
[»] chr8 (2 HSPs)
chr8 (1-239)||(40506466-40506710)
chr8 (23-95)||(27157711-27157783)
[»] chr6 (5 HSPs)
chr6 (24-95)||(6978523-6978594)
chr6 (11-87)||(33240882-33240956)
chr6 (12-57)||(29389189-29389234)
chr6 (12-84)||(20207190-20207261)
chr6 (12-84)||(22101213-22101284)
[»] chr7 (6 HSPs)
chr7 (15-95)||(44453599-44453679)
chr7 (11-62)||(17115917-17115968)
chr7 (30-93)||(31459410-31459473)
chr7 (13-95)||(22713449-22713530)
chr7 (11-88)||(35356397-35356473)
chr7 (40-93)||(48392390-48392443)
[»] chr1 (3 HSPs)
chr1 (15-62)||(31767939-31767986)
chr1 (23-62)||(31578007-31578046)
chr1 (9-87)||(32556521-32556598)
[»] chr3 (3 HSPs)
chr3 (32-94)||(26665523-26665585)
chr3 (25-83)||(1750080-1750138)
chr3 (30-95)||(7925344-7925409)
[»] chr2 (3 HSPs)
chr2 (29-95)||(37267713-37267779)
chr2 (2-95)||(13019665-13019759)
chr2 (12-52)||(38308103-38308143)
[»] chr5 (6 HSPs)
chr5 (20-95)||(13271483-13271558)
chr5 (9-62)||(17223101-17223154)
chr5 (30-95)||(30632492-30632557)
chr5 (9-62)||(40491709-40491762)
chr5 (15-83)||(35323616-35323684)
chr5 (15-83)||(41149519-41149587)
[»] chr4 (2 HSPs)
chr4 (29-87)||(24083174-24083232)
chr4 (11-85)||(39791212-39791285)


Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 40506710 - 40506466
Alignment:
Q  1 tataaacactc-ataaaaactttcaaaatcacgttgaaatatttcggattttacaatccaaattggacatacgagaaactcataggatggaaaaagataa 99  Q
    ||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| |    
T  40506710 tataaacactccataaaaacctccaaaatcacgttgaaatatttcggattttacaatccaaatagggcatacgagaaactcataggatgaaaaaagatga 40506611  T
Q  100 ccaaaaattttgcctcgtgttcttacatatcatcctctcactccttcattttatccaaactacatattttccctccaatataaacatgaaacacttcatc 199  Q
    |||||| |||| |||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40506610 ccaaaatttttacctcgtgttcttacatct-atcctctcactccttcattttatccaaactacttattttccctccaatataaacatgaaacacttcatc 40506512  T
Q  200 ttacatc------ctcttactccttcattttatctaaactacctat 239  Q
    |||||||      |||||||||||||||||||||||||||||||||    
T  40506511 ttacatctatacactcttactccttcattttatctaaactacctat 40506466  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 27157711 - 27157783
Alignment:
Q  23 caaaatcacgttgaaatatttcggattttacaatccaaattggacatacgagaaactcataggatggaaaaag 95  Q
    ||||| |||||||||||| ||||||||||| ||||| ||| | ||  |||||||||||||||| |||||||||    
T  27157711 caaaaccacgttgaaataattcggattttagaatccgaatagcacgcacgagaaactcatagggtggaaaaag 27157783  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 6978523 - 6978594
Alignment:
Q  24 aaaatcacgttgaaatatttcggattttacaatccaaattggacatacgagaaactcataggatggaaaaag 95  Q
    ||||| ||||||||||||||  ||||||| ||||||||| ||||  ||||||||||||||||||||||||||    
T  6978523 aaaattacgttgaaatattttagattttagaatccaaataggacgcacgagaaactcataggatggaaaaag 6978594  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 33240882 - 33240956
Alignment:
Q  11 cataaaaactttcaaaatcacgttgaaatatttcggattttacaatccaaattggacatacgagaaactcataggat 87  Q
    ||||||||| |||||||  ||||||||||||||||||||||| ||||| ||| || |  ||||||||||||||||||    
T  33240882 cataaaaaccttcaaaa--acgttgaaatatttcggattttagaatccgaatagggcgcacgagaaactcataggat 33240956  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 29389189 - 29389234
Alignment:
Q  12 ataaaaactttcaaaatcacgttgaaatatttcggattttacaatc 57  Q
    |||||||| ||||||| |||||||||| ||||||||||||| ||||    
T  29389189 ataaaaaccttcaaaaacacgttgaaacatttcggattttaaaatc 29389234  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 20207190 - 20207261
Alignment:
Q  12 ataaaaactttcaaaatcacgttgaaatatttcggattttacaatccaaattggacatacgagaaactcatag 84  Q
    |||||||||| ||||| |||||||||||||||| ||||||| ||||  ||| |||||| ||||| | ||||||    
T  20207190 ataaaaactt-caaaaacacgttgaaatatttcagattttagaatctgaataggacatgcgagatattcatag 20207261  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 22101213 - 22101284
Alignment:
Q  12 ataaaaactttcaaaatcacgttgaaatatttcggattttacaatccaaattggacatacgagaaactcatag 84  Q
    |||||||||| ||||| |||||||||||||||| ||||||| ||||  ||| |||||| ||||| | ||||||    
T  22101213 ataaaaactt-caaaaacacgttgaaatatttcagattttagaatctgaataggacatgcgagatattcatag 22101284  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 44453679 - 44453599
Alignment:
Q  15 aaaactttcaaaatcacgttgaaatatttcggattttacaatccaaattggacatacgagaaactcataggatggaaaaag 95  Q
    ||||||| ||||| ||||||||||||||||| |||||| ||||| ||| |||| ||||||||||| ||||| || ||||||    
T  44453679 aaaacttccaaaaacacgttgaaatatttcgaattttagaatccgaataggacgtacgagaaacttatagggtgaaaaaag 44453599  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 17115968 - 17115917
Alignment:
Q  11 cataaaaactttcaaaatcacgttgaaatatttcggattttacaatccaaat 62  Q
    ||||||||||||||||| |||||||||||||||  ||||||| |||||||||    
T  17115968 cataaaaactttcaaaaacacgttgaaatattttagattttaaaatccaaat 17115917  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 31459473 - 31459410
Alignment:
Q  30 acgttgaaatatttcggattttacaatccaaattggacatacgagaaactcataggatggaaaa 93  Q
    ||||||||||||||||||||||| |||   ||| ||||| |||||||||| ||||| |||||||    
T  31459473 acgttgaaatatttcggattttaaaatttgaataggacacacgagaaacttatagggtggaaaa 31459410  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 22713449 - 22713530
Alignment:
Q  13 taaaaactttcaaaatcacgttgaaatatttcggattttacaatccaaattggacatacgagaaactcataggatggaaaaag 95  Q
    ||||||| | ||||| |||||||||||||||| ||||||| ||| ||||| || |  |||||||||||||| | |||||||||    
T  22713449 taaaaacctccaaaaacacgttgaaatatttcagattttaaaattcaaatagg-cgcacgagaaactcataaggtggaaaaag 22713530  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 35356397 - 35356473
Alignment:
Q  11 cataaaaactttcaaaatcacgttgaaatatttcggattttacaatccaaattggacatacgagaaactcataggatg 88  Q
    ||||||||| | ||||| |||||| ||| ||||||||||||| ||| ||||| ||||  |||||||||||| ||||||    
T  35356397 cataaaaacctccaaaa-cacgttaaaacatttcggattttagaattcaaataggacgcacgagaaactcaaaggatg 35356473  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 48392443 - 48392390
Alignment:
Q  40 atttcggattttacaatccaaattggacatacgagaaactcataggatggaaaa 93  Q
    ||||||||||||| |||||||||  |||| ||||||||||||||| ||| ||||    
T  48392443 atttcggattttaaaatccaaatatgacacacgagaaactcatagaatgaaaaa 48392390  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 31767939 - 31767986
Alignment:
Q  15 aaaactttcaaaatcacgttgaaatatttcggattttacaatccaaat 62  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||    
T  31767939 aaaactttcaaaaacacgttgaaatatttcggattttaaaatccaaat 31767986  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 31578007 - 31578046
Alignment:
Q  23 caaaatcacgttgaaatatttcggattttacaatccaaat 62  Q
    ||||| |||||||||||||||||||||||| |||||||||    
T  31578007 caaaaacacgttgaaatatttcggattttagaatccaaat 31578046  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 32556521 - 32556598
Alignment:
Q  9 ctcataaaaactttcaaaatcacgttgaaatatttcggattttacaatccaaattggacatacgagaaactcataggat 87  Q
    ||||||||||| | |||||| |||||  |||||||| ||||||| ||||| ||| |||| | |||||||||||||||||    
T  32556521 ctcataaaaacctccaaaat-acgttacaatatttcagattttaaaatccgaataggacgtgcgagaaactcataggat 32556598  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 26665523 - 26665585
Alignment:
Q  32 gttgaaatatttcggattttacaatccaaattggacatacgagaaactcataggatggaaaaa 94  Q
    ||||||||||||||||||||| ||||||||| ||||   ||||||||||||||||||| ||||    
T  26665523 gttgaaatatttcggattttaaaatccaaataggacgcgcgagaaactcataggatgggaaaa 26665585  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 1750138 - 1750080
Alignment:
Q  25 aaatcacgttgaaatatttcggattttacaatccaaattggacatacgagaaactcata 83  Q
    |||||||||||||| ||||  ||||||| ||||||||| ||||  ||||||||||||||    
T  1750138 aaatcacgttgaaacattttagattttagaatccaaataggacgcacgagaaactcata 1750080  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 7925409 - 7925344
Alignment:
Q  30 acgttgaaatatttcggattttacaatccaaattggacatacgagaaactcataggatggaaaaag 95  Q
    ||||||||||||||| ||||||| |||| |||| |||||   |||||| ||||||| |||||||||    
T  7925409 acgttgaaatatttcagattttagaatctaaataggacacgtgagaaattcatagggtggaaaaag 7925344  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 37267779 - 37267713
Alignment:
Q  29 cacgttgaaatatttcggattttacaatccaaattggacatacgagaaactcataggatggaaaaag 95  Q
    |||||| ||||||||||||||||| ||||||||| || || ||||||| |||||| | |||||||||    
T  37267779 cacgttaaaatatttcggattttagaatccaaatagggcacacgagaagctcataaggtggaaaaag 37267713  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 13019665 - 13019759
Alignment:
Q  2 ataaacactc-ataaaaactttcaaaatcacgttgaaatatttcggattttacaatccaaattggacatacgagaaactcataggatggaaaaag 95  Q
    |||||||||| |||||||  ||||||||||| ||||||  |||| ||||||  ||||| ||  |||||  ||||||||||||||| |||||||||    
T  13019665 ataaacactccataaaaatcttcaaaatcacattgaaacgtttcagattttcaaatccgaaaaggacacgcgagaaactcatagggtggaaaaag 13019759  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 38308103 - 38308143
Alignment:
Q  12 ataaaaactttcaaaatcacgttgaaatatttcggatttta 52  Q
    |||||||||||||||| |||||||||| ||||| |||||||    
T  38308103 ataaaaactttcaaaaacacgttgaaacatttcagatttta 38308143  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 13271483 - 13271558
Alignment:
Q  20 tttcaaaatcacgttgaaatatttcggattttacaatccaaattggacatacgagaaactcataggatggaaaaag 95  Q
    |||||||| |||||||||||||||| ||||||| ||| ||||| ||||   ||||||||| ||| | |||||||||    
T  13271483 tttcaaaaacacgttgaaatatttcagattttagaattcaaataggacgcgcgagaaactaatatggtggaaaaag 13271558  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 17223154 - 17223101
Alignment:
Q  9 ctcataaaaactttcaaaatcacgttgaaatatttcggattttacaatccaaat 62  Q
    ||||||||||| | ||||| |||||||||||||||| ||||||| |||| ||||    
T  17223154 ctcataaaaacctgcaaaaacacgttgaaatatttcagattttagaatctaaat 17223101  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 30632557 - 30632492
Alignment:
Q  30 acgttgaaatatttcggattttacaatccaaattggacatacgagaaactcataggatggaaaaag 95  Q
    ||||| |||||||| |||||||| ||||| ||| || || |||||||||||| | |||||||||||    
T  30632557 acgttaaaatattttggattttaaaatccgaatagggcaaacgagaaactcaaaagatggaaaaag 30632492  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 40491762 - 40491709
Alignment:
Q  9 ctcataaaaactttcaaaatcacgttgaaatatttcggattttacaatccaaat 62  Q
    ||||||||||| | ||||| |||||||||| |||| |||||||| |||||||||    
T  40491762 ctcataaaaacctccaaaaacacgttgaaacattttggattttagaatccaaat 40491709  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 35323684 - 35323616
Alignment:
Q  15 aaaactttcaaaatcacgttgaaatatttcggattttacaatccaaattggacatacgagaaactcata 83  Q
    ||||| |||||||  ||||||||||||||||||||||| ||||  ||| ||||  ||||||| ||||||    
T  35323684 aaaaccttcaaaaatacgttgaaatatttcggattttagaatctgaataggacgcacgagaatctcata 35323616  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 41149587 - 41149519
Alignment:
Q  15 aaaactttcaaaatcacgttgaaatatttcggattttacaatccaaattggacatacgagaaactcata 83  Q
    ||||||||||||| |||| |||||||| | |||||||| ||| ||||| || || ||||||| ||||||    
T  41149587 aaaactttcaaaaacacgatgaaatatgttggattttagaattcaaatagggcacacgagaagctcata 41149519  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 24083232 - 24083174
Alignment:
Q  29 cacgttgaaatatttcggattttacaatccaaattggacatacgagaaactcataggat 87  Q
    |||||| ||||||||||||||||| ||||||||| || ||  ||||||||||| |||||    
T  24083232 cacgttaaaatatttcggattttagaatccaaatagggcacgcgagaaactcacaggat 24083174  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 39791285 - 39791212
Alignment:
Q  11 cataaaaactttcaaaatcacgttgaaatatttcggattttacaatccaaattggacatacgagaaactcatagg 85  Q
    ||||||||  ||||||| |||||||||||||||||||||||| ||| ||||| ||||  | |||||||| |||||    
T  39791285 cataaaaatcttcaaaa-cacgttgaaatatttcggattttagaattcaaataggacgcatgagaaacttatagg 39791212  T

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