View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_9 (Length: 541)
Name: NF2495_low_9
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 36608514 - 36609048
Alignment:
| Q |
1 |
tcattgttttctgatgatgatgcttccattttgatatgtacaatgttgattctgaatacctctgtttatatatgtataaactatattcttgatttttcaa |
100 |
Q |
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| T |
36608514 |
tcattgttttgtgatgatggtgcttccattttgatatgtacaacgttgattctgaatatctctgtttatatatgtataaactatattcttgatttttcaa |
36608613 |
T |
|
| Q |
101 |
gagaatgaaattcagctagggaggatagaggaagaattaggaggccatgactaacaatggacaatagataaattgcagctgttgaattattggccaaata |
200 |
Q |
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| T |
36608614 |
gagaatgaaattcagctagggaggatagaggaagaattaggaggccatgactaacaatggacaatagataaattgcagctgttgaattattggccaaata |
36608713 |
T |
|
| Q |
201 |
ttaagtaatgtctggaccacatctcaattcccagccttgaggacgtacagtccaatagtggccttttcactaaaatagacggatactactattattcttt |
300 |
Q |
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| T |
36608714 |
ttaagtaatgtctggaccacatctcaattcccagccttgaggacgtacagtccaataatggccttttcactaaaatagactgatactactattattcttt |
36608813 |
T |
|
| Q |
301 |
caaaattcaaataatatatatccatctatattatcccttaaaaaagattagactatatgtc-------------tcatttgtgtggtattacttacgacc |
387 |
Q |
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| T |
36608814 |
caaaattcaaataatatatatccgtctatattatcccttaaaaaagattaaactatatgtctcatttgtaatattcatttgtttggtattacttacgacc |
36608913 |
T |
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| Q |
388 |
ctggagttggtttggtggtgttgacttgcgaccttgaagtgcatttctctcatattcaattctcctcgatgacaatttaggtgaactaatttaccttctt |
487 |
Q |
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| T |
36608914 |
ctgaagttggtttggtggtgttgacttgcgaccttgaagtgcatttctctcagattcgattctcctcaatgacaatttaggtgagctagtttaacttatt |
36609013 |
T |
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| Q |
488 |
nnnnnnntacacttagataagagtaattaagaccc |
522 |
Q |
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| T |
36609014 |
aaaaaaatacactttgataagagtaattaagaccc |
36609048 |
T |
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Back To:
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 487
Target Start/End: Original strand, 27030419 - 27030471
Alignment:
| Q |
435 |
tctcatattcaattctcctcgatgacaatttaggtgaactaatttaccttctt |
487 |
Q |
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|||||| ||||||||||||||||| |||||| |||| ||||||||| |||||| |
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| T |
27030419 |
tctcatgttcaattctcctcgatgccaatttgggtggactaatttaacttctt |
27030471 |
T |
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