View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_90 (Length: 249)
Name: NF2495_low_90
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_90 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 32263858 - 32264098
Alignment:
| Q |
8 |
cgaagaatatatatctaactaaataaagataaaactaacttat--gattagtaactcaactaactnnnnnnntgaatttaagtggagcaatcctcccaat |
105 |
Q |
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| T |
32263858 |
cgaagaatatacatctaactaaataaagataaaactaacttatatgatcagtaactcaactaactaaaaaaatgaatttaagtggagcaatcctcccaat |
32263957 |
T |
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| Q |
106 |
tagtggttgtggataatattatttgtcaaatgagtgatgtctccatttacgaatattattcatgtcatctatcttaatttccaaactctttaaatcaatt |
205 |
Q |
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| T |
32263958 |
tagtggttgtggataatattatttgtcaaatgagtgatgtctccatttacgaatattattcatgtcatctatcttaatttccaaactctttagataaatg |
32264057 |
T |
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| Q |
206 |
cgttcatcggcaaggtattaatgtagctgctcattggctctttt |
249 |
Q |
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| T |
32264058 |
tgttcatcggcaagg---taatgtagttgctcattggctctttt |
32264098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 82 - 249
Target Start/End: Original strand, 32277232 - 32277396
Alignment:
| Q |
82 |
tttaagtggagcaatcctcccaattagtggttgtggataatattatttgtcaaatgagtgatgtctccatttacgaatattattcatgtcatctatctta |
181 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| |||||||||||| |
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| T |
32277232 |
tttaagtggagtaatcctcccaattagtggttgtggataatattatttgtcaaatgacttatgtttccatttacgaatattattcaaatcatctatctta |
32277331 |
T |
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| Q |
182 |
atttccaaactctttaaatcaattcgttcatcggcaaggtattaatgtagctgctcattggctctttt |
249 |
Q |
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| T |
32277332 |
atttccaaactatttaggtaaatttgttcaccggtaag---tcaatgtagttgctcatttgctctttt |
32277396 |
T |
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