View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_93 (Length: 247)
Name: NF2495_low_93
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_93 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 30033786 - 30033574
Alignment:
| Q |
1 |
atggtaaatcgttcaattttttgtagtatattctaacctcaagctctacttatgttcaacaaagaagtttacgacttacacttgctgtatttgaggactg |
100 |
Q |
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| T |
30033786 |
atggtaaatcattcaattttttgtagtatactctaacctcaagctctacttatgttcaacaaagaagtttacgacttacacttgctgtatttgaggactg |
30033687 |
T |
|
| Q |
101 |
ctgaagagttttgatgggagaggaccttcaagagatccaaactccataatactaagcatagtaaaggtttggagggnnnnnnntccttgttagatttcat |
200 |
Q |
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| T |
30033686 |
ctgaagagttttgatgggagaggaccttcaagagatccaaactccataatactaagcatagtataggtttggagggaaaaaaatccttgttagatttcat |
30033587 |
T |
|
| Q |
201 |
aacttggtaaggg |
213 |
Q |
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|||||| |||||| |
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| T |
30033586 |
aacttgataaggg |
30033574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 30045121 - 30045067
Alignment:
| Q |
107 |
agttttgatgggagaggaccttcaagagatccaaactccataatactaagcatag |
161 |
Q |
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| T |
30045121 |
agttttgatggaagaggaccttcaagtgctccaaactccataacactaagcatag |
30045067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 30049928 - 30049880
Alignment:
| Q |
64 |
gaagtttacgacttacacttgctgtatttgaggactgctgaagagtttt |
112 |
Q |
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| T |
30049928 |
gaagtttgtgacttacacttgctgtatttgaggactgctgaatagtttt |
30049880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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