View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_99 (Length: 243)
Name: NF2495_low_99
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_99 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 16907670 - 16907900
Alignment:
| Q |
15 |
agtaacaatacttgtgattataatttcacaagctttaccaaactccataacaaacacaattttgagtattcttataaacacagtgatagaaacatatatg |
114 |
Q |
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| T |
16907670 |
agtaacaatacttgacattataatttcacaagctttaccaaactccatgacaaacacaattttgagtattcttataaacacagtgatagaagcatatatg |
16907769 |
T |
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| Q |
115 |
actaacaaaataatattattgatttaacctctagacaaaggaattctcaatcagaatttcatacaaatacaatgattacatagacattgttacaaagcaa |
214 |
Q |
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| T |
16907770 |
actaacaaaataatattattgatctaacctctagacaaaggatttctcaatcagaatttcatacaaatacaatgattacatagacattgttacaaagaaa |
16907869 |
T |
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| Q |
215 |
aaacagaacagaag--acacttgaaaatgac |
243 |
Q |
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| T |
16907870 |
aaacagaacagaagacacacttgaaaatgac |
16907900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 14870607 - 14870505
Alignment:
| Q |
112 |
atgactaacaaaataatattattgatttaacctctagacaaaggaatt---ctcaatcagaatttcatacaaatacaatgattacatagacattgttaca |
208 |
Q |
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|||| |||||| ||||| ||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
14870607 |
atgaataacaacgtaataatattgatctaacctctagacaaaggcattattctcaatcagaatttcatacaaatacaatgtttgcatagacattgttaca |
14870508 |
T |
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| Q |
209 |
aag |
211 |
Q |
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||| |
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| T |
14870507 |
aag |
14870505 |
T |
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