View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2496-1-Insertion-2 (Length: 254)
Name: NF2496-1-Insertion-2
Description: 454-NF2496-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2496-1-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 137 - 251
Target Start/End: Original strand, 38792128 - 38792242
Alignment:
| Q |
137 |
gccaatcatcaccggaacaaccaatcatgcagaccctcatgtcgtgactgcagaaaatcagacaacagttcaaactaaaaacatcgtaacgacaatgtaa |
236 |
Q |
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| T |
38792128 |
gccaatcatcaccggaacaaccaatcatgcagactctcatgtcgtgactgcagaaaaccagacaacagttcaaactaaaaacatcgtaacgacaatgtaa |
38792227 |
T |
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| Q |
237 |
tcttggcttttgatg |
251 |
Q |
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| T |
38792228 |
tcttggcttttgatg |
38792242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 407728 - 407767
Alignment:
| Q |
3 |
tacaaacaaatccaaacaaacaagcctccacacactgatg |
42 |
Q |
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| T |
407728 |
tacaaacaaatccaaacaaacaagtctccacgcactgatg |
407767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 416214 - 416175
Alignment:
| Q |
3 |
tacaaacaaatccaaacaaacaagcctccacacactgatg |
42 |
Q |
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| T |
416214 |
tacaaacaaatccaaacaaacaagtctccacgcactgatg |
416175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 24184211 - 24184250
Alignment:
| Q |
3 |
tacaaacaaatccaaacaaacaagcctccacacactgatg |
42 |
Q |
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| T |
24184211 |
tacaaacaaatccaaacaaacaagtctccacgcactgatg |
24184250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 24345797 - 24345758
Alignment:
| Q |
3 |
tacaaacaaatccaaacaaacaagcctccacacactgatg |
42 |
Q |
| |
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|||||||||||||||||||||||| |||||| |||||||| |
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|
| T |
24345797 |
tacaaacaaatccaaacaaacaagtctccacgcactgatg |
24345758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 24358069 - 24358030
Alignment:
| Q |
3 |
tacaaacaaatccaaacaaacaagcctccacacactgatg |
42 |
Q |
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|||||||||||||||||||||||| |||||| |||||||| |
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| T |
24358069 |
tacaaacaaatccaaacaaacaagtctccacgcactgatg |
24358030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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