View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2496-Insertion-1 (Length: 926)
Name: NF2496-Insertion-1
Description: NF2496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2496-Insertion-1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 510 - 926
Target Start/End: Original strand, 50699275 - 50699694
Alignment:
| Q |
510 |
aaaaagtatgcaaccaattaattgaggccacaatataatgaatgtttttagaggtctctgcagtggttgagtatgatcatgagccaattaagtggtaaag |
609 |
Q |
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| T |
50699275 |
aaaaagtatgcaaccaattaattgaggctgcaatataatgaatgtttttagaggtctctgcagtggttgagtatgatcatgagccaattaagtggtaaag |
50699374 |
T |
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| Q |
610 |
tgttttgggagagagaagtcttgttggatggtttatgttttatccaatgtgtaatgaagggaaggaatcaagaacttgttgctagtatttcttatggtag |
709 |
Q |
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| T |
50699375 |
tgttttgggagagagaagtcttgttggatggtttatgttttatccaatgtgtaatgaaggggaggaatcaagaacttgttgctagtatttcttatggtag |
50699474 |
T |
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| Q |
710 |
ttgtttatattctagtaggcactcggacatcggtttagttgaagtgcgcactgatgttgttaaagatgaagagacaacagttttattggagggaggagct |
809 |
Q |
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| T |
50699475 |
ttgtttatattctagtaggcactcggacatcggtttagttgaagtgcgcactgatgttgttaaagatgaagagacaacagttttattggagggaggagct |
50699574 |
T |
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| Q |
810 |
ctgcagccagcatccccaactccaaaagctcgaagcttcactgcttcaacatcgattattcggtattaattcatgtagctcttc-ttttgcttgcac--a |
906 |
Q |
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| T |
50699575 |
ctgcagccagcatccccaactccaaaagctcgaagcttcactgcttcaacatcgattattcggtattaattcatgtagctcttctttttgcttgcacaaa |
50699674 |
T |
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| Q |
907 |
attttggttctatatttctg |
926 |
Q |
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| T |
50699675 |
attgtggttctatatttctg |
50699694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 8 - 514
Target Start/End: Original strand, 50698683 - 50699191
Alignment:
| Q |
8 |
attcatccgatcgttacttagttccgtttatcgcaatcgtttgttcttatttcgtgcgatgtgaattaccgattttttggattttgatgcttttaggttt |
107 |
Q |
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| T |
50698683 |
attcatccgatcgttacttagttccgtttatcgcaatcgtttcttctgatttcgtgcgatgtcaattactgattttttggattttgatgcttttaggttt |
50698782 |
T |
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| Q |
108 |
cgttcttgctcgggctctttccggtaattatagcatggatatattccgagattttggagtatcgcaaaaattctttaacgtccaaagcgtaagtttcatc |
207 |
Q |
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| T |
50698783 |
cgttcttgctcgggctctttccggtaattatagcatggatatattccgagattttggagtttcgcaaaaattctttaacgtccaaagcgtaagtttcatc |
50698882 |
T |
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| Q |
208 |
catcggttattactgannnnnnnnnnnnnnnnnnnnngtgctgtattatctgtttgaacatttaagttgtttgagactttatgagattagtagcattgtg |
307 |
Q |
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| T |
50698883 |
catcggttattactgtatttttttttttttttttgttgtgctgtattatctgtttgaacatttaagttgtttgagactttatgagattattagcattgtg |
50698982 |
T |
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| Q |
308 |
tgtatttttactatatctggctccttttaattgttatgatatatcgtggctaccgtta-tgcaatttcaaatttctagttgcttttttaaac-tacatat |
405 |
Q |
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| T |
50698983 |
tgtatttttactatatctggctccttttaattgttatgatatatcgtggctaccgttattgcaatttcgaatttctagttgcttttttaaacttacatat |
50699082 |
T |
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| Q |
406 |
ttcacaattgaaaatttgataatctgatcatacttaaattgagatatgcaaccaatgaagctttggctccgtgacactaacacgtcgacaccggtaaaaa |
505 |
Q |
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| T |
50699083 |
ttcacaattgaaagtttgataatctgatcatacttaaattgagttatgcaaccaatgaagctttgactccgtgacactaacacgttaacaccggtaaaaa |
50699182 |
T |
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| Q |
506 |
tttgaaaaa |
514 |
Q |
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| T |
50699183 |
tttgaaaaa |
50699191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 516
Target Start/End: Original strand, 3412889 - 3412926
Alignment:
| Q |
479 |
acactaacacgtcgacaccggtaaaaatttgaaaaagt |
516 |
Q |
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|||| |||| |||||||||||||||||||||||||||| |
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| T |
3412889 |
acacaaacatgtcgacaccggtaaaaatttgaaaaagt |
3412926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 516
Target Start/End: Complemental strand, 3433936 - 3433899
Alignment:
| Q |
479 |
acactaacacgtcgacaccggtaaaaatttgaaaaagt |
516 |
Q |
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| T |
3433936 |
acacaaacatgtcgacaccggtaaaaatttgaaaaagt |
3433899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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