View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2496-Insertion-10 (Length: 336)
Name: NF2496-Insertion-10
Description: NF2496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2496-Insertion-10 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 16021793 - 16022006
Alignment:
| Q |
8 |
agcagcacccctatagaaaaacccagcggatcagaaaacaaaacacaacagatatgcaagaggcgccccaaataccttaaactactatttattttgctca |
107 |
Q |
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| T |
16021793 |
agcagcaccactaaagaaaaacccagcggatcagaaaacaaaactcaacagatatgcaagaggcgccccaaatac-----------atttatttggctca |
16021881 |
T |
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| Q |
108 |
aatctcagatttgttgataaactttctatgaaacatcaaacaccctccatgtatggataaattcaggagtcccttcaatattttagcatgtagattattt |
207 |
Q |
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| T |
16021882 |
aatctcagatttgttgataaactttctatgaatcatcaaacaccctccatgtatggatcaattcaggagtcccttcaatattttagcatgtagatttttt |
16021981 |
T |
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| Q |
208 |
cttattttcacagatcagctatttc |
232 |
Q |
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| T |
16021982 |
cttattttcacagatcagctatttc |
16022006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 38534010 - 38533970
Alignment:
| Q |
259 |
atccgactcaatgacagactaatctgaggggttcaatctca |
299 |
Q |
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| T |
38534010 |
atccgactcaatgaccgtctaatctaaggggttcaatctca |
38533970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 5811770 - 5811725
Alignment:
| Q |
259 |
atccgactcaatgacagactaatctgaggggttcaatctcaccgtg |
304 |
Q |
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| T |
5811770 |
atccggctcaatgaccgactaatctaaggggttcaatcccaccgtg |
5811725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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