View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2496-Insertion-11 (Length: 307)
Name: NF2496-Insertion-11
Description: NF2496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2496-Insertion-11 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 8 - 307
Target Start/End: Complemental strand, 27896224 - 27895925
Alignment:
| Q |
8 |
gttgtggcatgatcttcatttatgtagctcaatgcatgctttcttggtacaaagactgataaactcttttgtaccttcccaacaaatgaatcaagcattt |
107 |
Q |
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| T |
27896224 |
gttgtggcatgatcttcatttatgtagctcaatgcatgctttcttggtacaaagactgataaactcttttgtaccttcccaacaaatgaatcaagcattt |
27896125 |
T |
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| Q |
108 |
tgaatattgaaacaattattagttaattattagagaacaaggtagtatctaaattattaattgagattgggatataattttatgtgcaggtttggctatt |
207 |
Q |
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| T |
27896124 |
tgaatattgaaacaattattagttaattattagagaacaaggtagtatctaaattattaattgagattgggatataattttatgtgcaggtttggctatt |
27896025 |
T |
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| Q |
208 |
tatgctgaacgaggacacgatatttctgaactctaggttatacgtagccacttaatagacggtaccggtgggtctttgccctatacactgcatttattga |
307 |
Q |
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| T |
27896024 |
tatgctgaacgaggacacgatatttctgaactctaggttatacgtagccacttaatagacggtaccggtgggtctttgccctatacactgcatttattga |
27895925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 27918331 - 27918223
Alignment:
| Q |
8 |
gttgtggcatgatcttcatttatgtagctcaatgcatgctttcttggtacaaagactgataaactcttttgtaccttcccaacaaatgaatcaagcattt |
107 |
Q |
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| T |
27918331 |
gttgtggcatgatcttcactccagtagctcaatgcatgctttcttggtacaaagactgataaactcttttgtaccttctcaacaaatgaactaagcatct |
27918232 |
T |
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| Q |
108 |
tgaatattg |
116 |
Q |
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| T |
27918231 |
tgaatattg |
27918223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 27929896 - 27929757
Alignment:
| Q |
6 |
cagttgtggcatgatcttcatttatgtagctcaatgcatgctttcttggtacaaagactgataaactcttttgtaccttcccaacaaatgaatcaagcat |
105 |
Q |
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| T |
27929896 |
cagttgtggcatgatcttcattccagtagctcaatgcatgctttctgggtacaaagactgataaactcttttgtgctttaccaacaaaagaactaagcat |
27929797 |
T |
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| Q |
106 |
tttgaatattgaaacaattattagttaattattagagaac |
145 |
Q |
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| T |
27929796 |
cttgaatattgaaagagttaatagtgattaattagagaac |
27929757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 27923517 - 27923408
Alignment:
| Q |
10 |
tgtggcatgatcttcatttatgtagctcaatgcatgctttcttggtacaaagactgataaactcttttgtaccttcccaacaaatgaatcaagcattttg |
109 |
Q |
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| T |
27923517 |
tgtggcatgatcttcactccagtagctcaatgcatgctttctcggtacaaagagtgataaactcttttgtactttaccaacaaaagaactaagcatcttg |
27923418 |
T |
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| Q |
110 |
aatattgaaa |
119 |
Q |
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| T |
27923417 |
aatactgaaa |
27923408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 27918220 - 27918129
Alignment:
| Q |
142 |
gaacaaggtagtatctaaattattaattgagattgggatataattttatgtgcag-gtttggctatttatgctgaacgaggacacgatattt |
232 |
Q |
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| T |
27918220 |
gaacaatgtagtatttgaattattaatcaagattggaatatgattttattagcagagtttggctatttatgctgagcgagaacacgatattt |
27918129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 27918080 - 27918020
Alignment:
| Q |
222 |
acacgatatttctgaactctaggttatacgtagccacttaatagacggtaccggtgggtct |
282 |
Q |
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| T |
27918080 |
acacgatatttcttaactctaggttacacatagccagttaatatacggtacaggtgggtct |
27918020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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