View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2496-Insertion-4 (Length: 576)
Name: NF2496-Insertion-4
Description: NF2496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2496-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 8 - 576
Target Start/End: Original strand, 33556363 - 33556943
Alignment:
| Q |
8 |
gtttccccaatctgttatgaattgttgctcacatgaaacaaaaatatgtccttaaaatcttgatcatagattatttgatgaattgaagatgaagagaata |
107 |
Q |
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| T |
33556363 |
gtttccccaatctgttatgaattgttgctcacatgaaacaaaaatatgtccttaaaatcttgatcatagattatttgatgaattgaagatgaagagaata |
33556462 |
T |
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| Q |
108 |
tactaacactttgcaacttttgatattaagctttaagaatctcaaatttttagggttaggatgaagtgttaaaatttaattgtgaaatgtctagagtcat |
207 |
Q |
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| T |
33556463 |
tactaacactttgcaacttttgatattaagctttaagaatctcaaatttttagggttaggatgaagtgttaaaatttaattgtgaaatgtctagagtcat |
33556562 |
T |
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| Q |
208 |
gatgcctttgtttatcacataaatttcttagtataa-----tatgtat-------gtatggttcatatataaagcaattcagtaaagaataaatttctta |
295 |
Q |
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| T |
33556563 |
gatgcctttgtttatcacataaatttcttagtataaagtactatgtatttaatatgtatggttcatatataaagcaattcagtaaagaataaatttctta |
33556662 |
T |
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| Q |
296 |
acataaggtagtatcactatgtatttatggttcaaatatgtaaaattcttcaactttttaaagagtttttatatactttctaatgataataaagtacctg |
395 |
Q |
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| T |
33556663 |
acataaggtagtatcactatgtatttatggttcaaatatgtaaaattcttcaactttttaaagagtttttatatactttctaatgataataaagtacctg |
33556762 |
T |
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| Q |
396 |
aacaagtacatagcaaccaaatacaagacttgcactaatcaaagttgcgattagaaggtaattctgcaagaaaataaggatgcaagagtgaaatttatac |
495 |
Q |
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| T |
33556763 |
aacaagtacatagcaaccaaatacaagacttgcactaatcaaagttgcgattagaaggtaattctgcaagaaaataaggatgcaagagtgaaatttatac |
33556862 |
T |
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| Q |
496 |
aatggtagagcatgcaaaatgcaaaatttaatcacacttacctccattagctattttaattaaattctatttaacaaatta |
576 |
Q |
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| T |
33556863 |
aatggtagagcatgcaaaatgtaaaatttaatcacacttacctccattagctattttaattaaattctattcaacaaatta |
33556943 |
T |
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